Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2490 ATGGTGAATCCAATTACTGAAGCTGATAACAAGTGCCCCATTTGTGACACAGAATTTGCTGAGATAATCATGGATAACATAATGGATCAAAGTGATAATGCTATTGATTTAAGGTCTACTTGGATGTTCATACTTTATGCACCAATATTTCTAGGCTTGATGGGTGCAATTAGCCCTCTTATTCCCCCCGGCGCCGCCCCTCCGGCCGGCGAAGACGAGGCAGAGAACGAACTTACGACGAGGAGAAGAGGATCGACTAGCTATGTAATGCATCTCTTCCGAGGTCTTCATGTTAGGAGCTTTGATAATAATAATCGTAGTACTCGCAATAGAAGTGTAGACGCCAGCAACATGGTTGTGATTGATCCGTTTACGGACGGAGCCTTGATTTTTCGAGTTCCGAACATGAATCATCATACAACAACAAGCAATCAAAATGAGAGCACGAGCATTGGATCCTTCCATGAGTTTCTGGTGGGATCAGGATTTGATTTGTTGCTGCAGCAGTTGGCACAGAACGGAGGAAGTGGATATGGAAGTGTTGTGAACCCGCCAACAAAGAAGGCAGCAATAGAAGCATTACCGAGTGTGATTATCAGTGAAGAGATTTTACAGTGCATGGTTTGTTTGGAAGAGATTGAGATTGGAAATGAAGCAAAGGAGATGCCATGTCTCCATAAATTTCATGGTGACTGCATAATCTCATGGCTTAAACCTCATAGTTCATGCCCTGTTTGTAGGTTTCAGATGCCTTTTGAGGATTTCACAGCTGAAATTAGCAACGATGGGAATCAAAATAGTGAACTTGTCACAGGATCAAGAAGGAACTGGTTTCCAATGCTGCAATCGTTTAATAATTTTCTTCCACCACCTTGA 876 0.4269 MVNPITEADNKCPICDTEFAEIIMDNIMDQSDNAIDLRSTWMFILYAPIFLGLMGAISPLIPPGAAPPAGEDEAENELTTRRRGSTSYVMHLFRGLHVRSFDNNNRSTRNRSVDASNMVVIDPFTDGALIFRVPNMNHHTTTSNQNESTSIGSFHEFLVGSGFDLLLQQLAQNGGSGYGSVVNPPTKKAAIEALPSVIISEEILQCMVCLEEIEIGNEAKEMPCLHKFHGDCIISWLKPHSSCPVCRFQMPFEDFTAEISNDGNQNSELVTGSRRNWFPMLQSFNNFLPPP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2490 291 Pfam Ring finger domain 205 247 IPR001841 -
Ahy10g2490 291 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Ahy10g2490 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 252 IPR013083 -
Ahy10g2490 291 SUPERFAMILY RING/U-box 197 253 - -
Ahy10g2490 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 289 - -
Ahy10g2490 291 SMART ring_2 206 246 IPR001841 -
Ahy10g2490 291 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2490 Ahy-Chr10 114415340 114416215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2490 102 265 C3H Transcription Factor Family AT1G26800 34.545 3.08e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2490 K11982 - adu:107471619 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3053 20 141203825 141204781 Ahy10g2490 10 114415340 114416215 hybridization