LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g2473	ATGGCGAAAATTCCCATCTTTATGGTGGGTTTTTTGCTGTTGAACTGCTGGGTAGCCTTGGCAGATGCAGAGTACTTGAAATATAAAGATCCAAAACAGCCTTTGAATGTTCGAATCAAGGATCTCATAAACAGAATGACTTTGGAGGAGAAGATTGGCCAAATGGTGCAGATTGATCGCACTGTTGCATCAGCTAATGCCATTAACAAGTACTTTATAGGGAGTGTGCTAAGTGGGGGAGGAAGTGTTCCAAAGAAGCAGGCTAGTGCAGAGGATTGGATTAACATGGTGAATGATTTTCAAAAAGGTGCTTTATCAACTAGGCTGGGAATTCCTATGATTTATGGAATTGATGCTGTTCATGGCCATAACAATGTCTACAAAGCAACCATTTTTCCTCACAACATTGGGATGGGAGCTACTAGGGACCCAGAACTTGTGAAGAAGATTGGAGAAGCAACTGCACTTGAAGTTAGAGCTACCGGAATTCCATATGTGTTTGCACCTTGCATTGCTGTTTGTAGAGATCCAAGGTGGGGTCGCTGCTATGAAAGTTATAGTGAAGATCCTACACTAGTCCAAGCTATGACAGAGATCATTCCCGGATTGCAAGGTCAAATCCCTGCAAATTCACGAAAGGGTGTTCCCTTTGTTGCTGGAAAAAAGAATGTAGCAGCTTGTGCTAAACACTATGTTGGAGATGGAGGAACCACAAAAGGAATCAATGAGAACAACACAGTGATAGATAGACATGGATTGCTTAGCATTCACATGCCAGGCTACTATAACTCAATCATCAAGGGAGTGTCTACTGTCATGGTCTCTTTTTCAAGCTGGAATGGAGTTAAGATGCACGCTAACCGTGAACTAGTCACTGGCTTCCTCAAGAACACCCTTCGTTTCAGGGGTTTTGTTATATCAGATTGGCAGGGAATTGATAGGATTACTTCCCCTCCTCATGCCAACTATACATATTCCATTCTTACCGGAATTACTACTGGAATTGACATGATAATGGTTCCTTTCAACTACACAGAATTCATAGATGGCCTAACCTCTCTAGTGAAACATAATTTCATACCCACGAGTCGAATTGATGATGCAGTGAGGAGAATTTTAAGGGTTAAGTTCATGATGGGCCTTTTTGAGAATCCACTTGCTGATTACAGCTTAGTCAACCAACTTGGGAGACAGGAGCATAGAGACTTAGCTAGAGAAGCTGTAAGGAGATCATTAGTATTGTTAAAGAATGGTCAATATGCACATAAACCATTGCTTCCTCTTCCTAAGAAGGCTTCAAAAATACTTGTTGCCGGAAGCCATGCTGATAATCTCGGTTATCAGTGTGGTGGTTGGACCATTGATTGGCAAGGACTAAGTGGAAACAACCTTACCACTGGCACAACTATTCTAAGTGCTATAAAAAACACTGTTGATAAAGACACTAAGGTGGTTTACAAGGAGAACCCTGATTTGGAGTATGTGAAGTCCAATGATTTTTCATATGCAATTGTGGTAGTTGGAGAGCATCCATATGCAGAGACATTTGGAGACAGCTTGAACTTGACAATACCAGATCCTGGTCCACAAACCATAACAAATGTTTGTGGAGGAGTGAAATGTGTTGTTGTAGTAATCTCTGGTCGCCCTGTGGTTATACAACCATATCTTGACACCATTGAAGCACTTGTTGCTGCATGGCTTCCAGGAACAGAGGGACAAGGTGTTGCTGATGTTCTGTTTGGTGATTATGGTTTCACTGGCAAGCTTCCAAGAACATGGTTTAAGACTGTTGATCAGTTACCTATGAATGTTGGTGATTCTCATTATGACCCACTTTATCCATTTGGATTTGGCCTTACAACCAAACCCAACAAAGTAGAATAA	1887	0.4155	MAKIPIFMVGFLLLNCWVALADAEYLKYKDPKQPLNVRIKDLINRMTLEEKIGQMVQIDRTVASANAINKYFIGSVLSGGGSVPKKQASAEDWINMVNDFQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNIGMGATRDPELVKKIGEATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPTLVQAMTEIIPGLQGQIPANSRKGVPFVAGKKNVAACAKHYVGDGGTTKGINENNTVIDRHGLLSIHMPGYYNSIIKGVSTVMVSFSSWNGVKMHANRELVTGFLKNTLRFRGFVISDWQGIDRITSPPHANYTYSILTGITTGIDMIMVPFNYTEFIDGLTSLVKHNFIPTSRIDDAVRRILRVKFMMGLFENPLADYSLVNQLGRQEHRDLAREAVRRSLVLLKNGQYAHKPLLPLPKKASKILVAGSHADNLGYQCGGWTIDWQGLSGNNLTTGTTILSAIKNTVDKDTKVVYKENPDLEYVKSNDFSYAIVVVGEHPYAETFGDSLNLTIPDPGPQTITNVCGGVKCVVVVISGRPVVIQPYLDTIEALVAAWLPGTEGQGVADVLFGDYGFTGKLPRTWFKTVDQLPMNVGDSHYDPLYPFGFGLTTKPNKVE*	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy10g2473	628	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	12	626	-	-
	Ahy10g2473	628	Gene3D	-	21	396	IPR036962	GO:0004553\|GO:0005975
	Ahy10g2473	628	Pfam	Glycosyl hydrolase family 3 N terminal domain	47	375	IPR001764	GO:0004553\|GO:0005975
	Ahy10g2473	628	PRINTS	Glycosyl hydrolase family 3 signature	294	312	IPR001764	GO:0004553\|GO:0005975
	Ahy10g2473	628	PRINTS	Glycosyl hydrolase family 3 signature	178	194	IPR001764	GO:0004553\|GO:0005975
	Ahy10g2473	628	PRINTS	Glycosyl hydrolase family 3 signature	108	124	IPR001764	GO:0004553\|GO:0005975
	Ahy10g2473	628	PRINTS	Glycosyl hydrolase family 3 signature	224	240	IPR001764	GO:0004553\|GO:0005975
	Ahy10g2473	628	PRINTS	Glycosyl hydrolase family 3 signature	132	151	IPR001764	GO:0004553\|GO:0005975
	Ahy10g2473	628	Pfam	Glycosyl hydrolase family 3 C-terminal domain	412	621	IPR002772	GO:0004553\|GO:0005975
	Ahy10g2473	628	PANTHER	BETA-D-GLUCOSIDE GLUCOHYDROLASE	12	626	-	-
	Ahy10g2473	628	SUPERFAMILY	(Trans)glycosidases	26	411	IPR017853	-
	Ahy10g2473	628	Gene3D	-	397	623	IPR036881	GO:0004553\|GO:0005975
	Ahy10g2473	628	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	412	621	IPR036881	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g2473	Ahy-Chr10	114321551	114328810	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy10g2473	11	627	Glycoside Hydrolase	AT5G20950	75.851	0.0	959

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g2473	K05349		-	gmx:100819414	1088.17

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g3036	20	141078215	141082660	Ahy10g2473	10	114321551	114328810	hybridization
	Ahy10g2473	10	114321551	114328810	Ahy14g3094	14	139706580	139707592	PCT
	Ahy10g2473	10	114321551	114328810	Ahy4g2731	4	125328492	125329358	PCT
	Ahy14g3094	14	139706580	139707592	Ahy10g2473	10	114321551	114328810	PCT
	Ahy4g2731	4	125328492	125329358	Ahy10g2473	10	114321551	114328810	PCT