Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2450 ATGGCTTCCTCTATTTCCTCTGATATCCGTTTTTTCAAGATTGGTCTCAGAAAAAGCCTTGAAGATGGAAACCTTAAGTTACCAAAGAAGTTCAGTAAGAAATATGGTGATGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTTTGTATGATGGTGTGATTCAATTTGAAAATGGTTGGAACGAATTTGCTTCATATTACTCTTTGGATAATGGCCATCTGCTGTGTTTTGCGTACAATGAAACTTCTAACATTGAAGTACAAATTTTTGACATCATTGATGGCTTTGAAATAAAGTATCCTTCCTTGGATCACATCGGCGATGACAATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGCATAAAACTGAAAGCAGCAGCAGAAGTATCATCTCCGTCTACAAGTAAAATATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATAAACAAAACTGGATGTAG 519 0.395 MASSISSDIRFFKIGLRKSLEDGNLKLPKKFSKKYGDGVPNPVYLKPPDGTAWKIDWSLYDGVIQFENGWNEFASYYSLDNGHLLCFAYNETSNIEVQIFDIIDGFEIKYPSLDHIGDDNSIEILNELPPRGWPSIKLKAAAEVSSPSTSKILRSSVKTGDVEKGPDKQNWM* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2450 172 MobiDBLite consensus disorder prediction 147 172 - -
Ahy10g2450 172 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 131 - -
Ahy10g2450 172 CDD B3_DNA 10 101 IPR003340 GO:0003677
Ahy10g2450 172 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Ahy10g2450 172 Gene3D - 4 102 IPR015300 -
Ahy10g2450 172 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Ahy10g2450 172 SUPERFAMILY DNA-binding pseudobarrel domain 5 101 IPR015300 -
Ahy10g2450 172 SMART B3_2 11 103 IPR003340 GO:0003677
Ahy10g2450 172 PANTHER B3 DOMAIN-CONTAINING 7 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2450 Ahy-Chr10 114076609 114077849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2450 10 124 B3 DNA Binding Superfamily AT4G01580 36.134 8.15e-15 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy10g2450 B3 1.50E-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2450 - - adu:107471775 320.087