Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2449 ATGACTTCCTCTAACTATCAACAAAACGAGCATTCTTCTTCTAAATCTCCTGTGATCCGTTTCTTCAAGGTTATCCTCAGAAAAACTCTTCAAGATGAAAACTTTAAGTTACCAAAAAAGTTCACTAGAAAATATGGTTCTGACCTATCAAACCCATTGTATCTTAAGCCTCCGGATGATACTGAATGGAGAGTAGGTTGGATCATTCATGATGGTGAAATTTTGTTTAAAGAAGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATGATGGCCATGTGTTATGGTTTGAGTATAATATTGGAACTTCTCGCATTGAAGTACAAATATCTGACATGAGTGGCCTCGAAATAGAGTATCCTGTCAATGATCAGATCAAAGAGCACCCGCCACAACACAGGGGCGAGCCGGTGGAAAGGCCAAAAGAACAACAAACTAGAGATGTGGATAGCAGTCCCAACACTCAAAACATGAGACTTAACGAGGTACGGCAGAAGAAAAGATTGAATGAACCACTACTAGGAGTCCGGGGCCAACCGAAGAAAAAACTGAGAGCACCAGTGTCATCTGCTTCTAAAGGTAGACAGTTGGAAAATGACACACAAATCAGGGAAGGTATTAAATTTGAAAAGAAAAAACATAAGATGCCAGTGTCTATCAATCAAGATTCTAATGGCAAAAGAAATAGAAAAAGAAAAGATTCTGAATCTTCTGTTAGTCCCTGTCTTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAGCAACTGTCTCAAACGAGGGCACCACGTTACTTTCCAACTAAATTCTTCAGGAAGTATTTTGTAAATAATCCACAAAATGCTAATATAAGGTTTGGAAAGAAGTTATTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGATGCCTTTATGTCTGCTGGTTGGAACTTTTTTGCTCGAGCTAGTAAATTACAAGCCGAAGATGTTTGTTTGTTTAAGCTCGTCAATAGAAAAGATCCAGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAATCAGTGACTCATGAGATTCAGCTCCTGAAAGAAGTTAAGGAGCTCAATTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGGAGTTGTGGCCTGTTACTATAATCTACAATCCGTCGTCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAATAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTATTTAATGTTCATGTCTGTAGAGTCCAATACTAG 1446 0.3831 MTSSNYQQNEHSSSKSPVIRFFKVILRKTLQDENFKLPKKFTRKYGSDLSNPLYLKPPDDTEWRVGWIIHDGEILFKEGWKEFVAYYSLDDGHVLWFEYNIGTSRIEVQISDMSGLEIEYPVNDQIKEHPPQHRGEPVERPKEQQTRDVDSSPNTQNMRLNEVRQKKRLNEPLLGVRGQPKKKLRAPVSSASKGRQLENDTQIREGIKFEKKKHKMPVSINQDSNGKRNRKRKDSESSVSPCLARPESLKEAKKFKWEKPSFIIKIKQLSQTRAPRYFPTKFFRKYFVNNPQNANIRFGKKLFPVKLIYRPSSCDAFMSAGWNFFARASKLQAEDVCLFKLVNRKDPVLDVHICRRQRRESLSKSVTHEIQLLKEVKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKELWPVTIIYNPSSRNTFISAGWSSFARANKLEAGDVCVFELINKKDLFNVHVCRVQY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2449 481 Gene3D - 367 481 IPR015300 -
Ahy10g2449 481 Gene3D - 244 358 IPR015300 -
Ahy10g2449 481 SUPERFAMILY DNA-binding pseudobarrel domain 14 114 IPR015300 -
Ahy10g2449 481 CDD B3_DNA 384 478 IPR003340 GO:0003677
Ahy10g2449 481 Pfam B3 DNA binding domain 275 357 IPR003340 GO:0003677
Ahy10g2449 481 Pfam B3 DNA binding domain 21 109 IPR003340 GO:0003677
Ahy10g2449 481 Pfam B3 DNA binding domain 400 479 IPR003340 GO:0003677
Ahy10g2449 481 PANTHER B3 DOMAIN-CONTAINING 13 355 - -
Ahy10g2449 481 PANTHER B3 DOMAIN-CONTAINING 362 479 - -
Ahy10g2449 481 ProSiteProfiles B3 DNA-binding domain profile. 427 480 IPR003340 GO:0003677
Ahy10g2449 481 MobiDBLite consensus disorder prediction 198 218 - -
Ahy10g2449 481 Gene3D - 14 115 IPR015300 -
Ahy10g2449 481 SUPERFAMILY DNA-binding pseudobarrel domain 256 356 IPR015300 -
Ahy10g2449 481 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Ahy10g2449 481 SUPERFAMILY DNA-binding pseudobarrel domain 379 478 IPR015300 -
Ahy10g2449 481 MobiDBLite consensus disorder prediction 124 245 - -
Ahy10g2449 481 SMART B3_2 21 114 IPR003340 GO:0003677
Ahy10g2449 481 SMART B3_2 262 357 IPR003340 GO:0003677
Ahy10g2449 481 SMART B3_2 386 480 IPR003340 GO:0003677
Ahy10g2449 481 MobiDBLite consensus disorder prediction 124 147 - -
Ahy10g2449 481 CDD B3_DNA 20 112 IPR003340 GO:0003677
Ahy10g2449 481 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 355 - -
Ahy10g2449 481 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 362 479 - -
Ahy10g2449 481 CDD B3_DNA 260 355 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2449 Ahy-Chr10 114072613 114076110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2449 373 471 B3 DNA Binding Superfamily AT3G18990 34.000 5.59e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy10g2449 B3 1.30E-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2449 - - adu:107471893 740.725