Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2448 ATGGCTTCCTCTATTTCCTCTGATATCCGTTTCTTCAAGATTGGTCTCGGAAAAAGCGTTGAAGATGGAAACCTTAAGTTACCAGAAAAGTTCAGTAAGAAATATGGTGATGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTTTGTATGATGGTGTGATTCAATTTGAAAATGGTTGGAACGAATTTGCTTCATATTACGCTTTGGATAATGGCAATCTGCTGATGTTTGTGTACAATGAAACTTCTAACATTAAAGTACACATTCTTGACATCATTTATGGCCTTGAAATAAACTATCCTTCCTTGGATCACATTGGCGATGACAATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAAGACTGAAAGCAGCACCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAACAATGAAGAAGCTAGTCAATCTTAA 552 0.3949 MASSISSDIRFFKIGLGKSVEDGNLKLPEKFSKKYGDGVPNPVYLKPPDGTAWKIDWSLYDGVIQFENGWNEFASYYALDNGNLLMFVYNETSNIKVHILDIIYGLEINYPSLDHIGDDNSIEILNELPPRGWPRKRLKAAPEVSSPSTSKILRSSVKTGDVEKGPDKQNWMQCCNNEEASQS* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2448 183 Pfam B3 DNA binding domain 17 100 IPR003340 GO:0003677
Ahy10g2448 183 CDD B3_DNA 10 101 IPR003340 GO:0003677
Ahy10g2448 183 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Ahy10g2448 183 MobiDBLite consensus disorder prediction 137 183 - -
Ahy10g2448 183 PANTHER B3 DOMAIN-CONTAINING 7 170 - -
Ahy10g2448 183 SUPERFAMILY DNA-binding pseudobarrel domain 5 101 IPR015300 -
Ahy10g2448 183 SMART B3_2 11 103 IPR003340 GO:0003677
Ahy10g2448 183 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 170 - -
Ahy10g2448 183 Gene3D - 4 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2448 Ahy-Chr10 114051447 114052692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2448 11 112 B3 DNA Binding Superfamily AT3G18990 34.314 4.41e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy10g2448 B3 9.80E-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2448 - - adu:107471775 372.859