Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2438 ATGGTGTATTGTGATCACTGTGTCCAAAATGTTAGTGCGTTGAGAACTGATTATGGTTCTTTATGTTGTGGCACATGTGGTAAGGTGTTGCAAGATTATCTTTTTTCTGAAGAGGCCACATTTGTGAAAAATTCATCTGGACAGAGCCAATTATCTGGCCATTATGTCAGAACAATTCAAAGCGAATTCTCTGCCTCACGTCAAAGGACTATAGATAGAGCTTTTGAGGAGATCAAATACTTAAGTTATGGCCTTGGAGTGAACGATGATAACATGACCGTGCAAGCTGTGGCCTTTTATAGAATAGCACTTGAGCGGAATTTTACCCGGGGACGTAAATCAGAGCAAGTGCAGGCTGCTTGTCTTTATATTGCATTCCGGGAAAATAATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGATAAATGTTTACGTTCTAGGTGCAGTTTTTTTACAGCTGTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAGAAGCCTGTTGATCCCAGTCTTTTTATTTATAAATACACAAATAATTTGTTAAAGGAAAGGAACTTGGTTGTCTCTGAAACCGCGCTGAGTATTATTGCTAGCATGAAACGTGACTGGATGCAGACAGGGAGAAAGCCAAGCGGATTATGTGGTGCAGCATTATATATGTCTGCTCTTGCAAATGGTTTTAAGTGCTCTAAGTCAGACATTATTGAGGAGTTGCATACAATGGCAAAAGAGCATGAAAAGCAGCCAATTAAAGTACCAAATGGTGAATTGAACAAATGTACTTCCGAAGATCTACTATGTGAGCACAAGGGTACTGCTGTGCCTTATTTTGCACTTGGATTGTGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGTGGACTTGATGGTGGCTTGGATCCTCCTGCTTTCCAGCGTGCTGAGAGGGAGAGAAGGGTAAAATCAGATTCTGAGGAAAGTGCCAATAGAACAGATGATATGGTGAAAGCATCAAATGGTGAACATGGAAGCCAAAAAGAGGGATTACATGCCTCAGAGCCAAAAAGTGTTGGAGATAACTATGAGCACACAGCCACTCAAGATGGCAACCTTGATGAATCACATGAAGATGATACGAAGACTAAAACTCATGATGAATCAGAAAGTTTATCTGATATTGATGATCTAGAGGTTGATAGCTACCTTCACAATGAGGAGGAAAAACATTACAAGAAGATTATATGGGAAAATATGAATCGAGAATATCTTGAGGAACAAGCAGCTAAGGAAGCAGCTGCTGCAGCTGCTAAGAAATTTGCCGAGGCAAATTGTTCCGAAGAGGAGCTAGCAGCAAGAGAATTTGCGAAATCAGCTGCTGATGCTGTGGCAAAGTCCAGAAAGGAAATGAGACAAAAACGAGCTCAAGAGGCCAAAAATTCTGGTCCTGCTCAATCTGCTATAGAGGCCACCCGGCAGATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGTTTAGAAAAGCTATTTGGTGATCCTGTATCTACAGAAAATCCCAAGAAAGTACGATTTGATCCATCTTTGGACAACGATGAAAATAAAGAATCCAAATTAGAGGGAAAACTAAAGGATGATGATGCAGTAGGAATAGAAGATGAAGTTGAGGATGGTGACATGACTGGAGAATATGAAGATAATATGTATCAGGAAAATGGAGATGAGGCATATGAGGATGAATATTATGACGATGGTGATTATTGA 1764 0.3985 MVYCDHCVQNVSALRTDYGSLCCGTCGKVLQDYLFSEEATFVKNSSGQSQLSGHYVRTIQSEFSASRQRTIDRAFEEIKYLSYGLGVNDDNMTVQAVAFYRIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKERNLVVSETALSIIASMKRDWMQTGRKPSGLCGAALYMSALANGFKCSKSDIIEELHTMAKEHEKQPIKVPNGELNKCTSEDLLCEHKGTAVPYFALGLCETCYKDFDKLSGGLDGGLDPPAFQRAERERRVKSDSEESANRTDDMVKASNGEHGSQKEGLHASEPKSVGDNYEHTATQDGNLDESHEDDTKTKTHDESESLSDIDDLEVDSYLHNEEEKHYKKIIWENMNREYLEEQAAKEAAAAAAKKFAEANCSEEELAAREFAKSAADAVAKSRKEMRQKRAQEAKNSGPAQSAIEATRQMLRTKRLSSKVNYDRLEKLFGDPVSTENPKKVRFDPSLDNDENKESKLEGKLKDDDAVGIEDEVEDGDMTGEYEDNMYQENGDEAYEDEYYDDGDY* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2438 587 MobiDBLite consensus disorder prediction 365 388 - -
Ahy10g2438 587 Gene3D Single helix bin 381 432 - -
Ahy10g2438 587 SUPERFAMILY Cyclin-like 172 244 IPR036915 -
Ahy10g2438 587 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 515 IPR000812 GO:0006352|GO:0070897
Ahy10g2438 587 MobiDBLite consensus disorder prediction 309 339 - -
Ahy10g2438 587 MobiDBLite consensus disorder prediction 550 587 - -
Ahy10g2438 587 CDD CYCLIN 173 250 IPR013763 -
Ahy10g2438 587 MobiDBLite consensus disorder prediction 464 487 - -
Ahy10g2438 587 Gene3D - 64 165 - -
Ahy10g2438 587 MobiDBLite consensus disorder prediction 302 397 - -
Ahy10g2438 587 MobiDBLite consensus disorder prediction 509 587 - -
Ahy10g2438 587 MobiDBLite consensus disorder prediction 519 549 - -
Ahy10g2438 587 Pfam Brf1-like TBP-binding domain 390 511 IPR011665 -
Ahy10g2438 587 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 515 IPR029529 GO:0000126|GO:0000995|GO:0006383
Ahy10g2438 587 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Ahy10g2438 587 Gene3D - 173 257 - -
Ahy10g2438 587 Pfam Transcription factor TFIIB repeat 170 245 IPR013150 GO:0017025
Ahy10g2438 587 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Ahy10g2438 587 CDD CYCLIN 96 144 IPR013763 -
Ahy10g2438 587 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Ahy10g2438 587 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Ahy10g2438 587 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2438 Ahy-Chr10 113962984 113976735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2438 1 496 Inorganic Solute Cotransporters AT2G01280 37.214 1.37e-90 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2438 K15196 - gmx:100789154 685.641