Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2406 ATGGGAGATGAAAGCAATTGCAGCATGAACATGGAGGAAGAAGTTCAAGGCGTTGAAGAAAGAGATCCAGAAAGCAACACCAATACCAATAACACTCCCAATCCATTACACGAGCCACTTCTCAAGAGAAACAGAACTCTCTCTTCCAATCCACTCGCACTCGTTGGCGCCAAAGTTTCCTACATAGAAAGCTTGGACTACGAGATCAATGAGAATGATCTGTTCAAGCAAGATTGGAGAACAAGGTCAAGAGCTCAGGTGTTGCAGTACATATTCTTGAAATGGTCGCTCGCGTTTCTTGTTGGTCTTCTCACCGGCGTCATCGCCACTCTCATCAATCTTGCCATTGAGAACATTGCAGGATACAAGCTTCTTGCCGTCGTTCAGTACATCCACAAAGAAAGGTACATGGCAGGTTTTCTATATTTCACGGGTGTTAATTTCCTATTAACGTTCGTTGCTGCAATTCTCTGTGTGTGTTTTGCACCAACAGCAGCTGGGCCTGGAATACCAGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTACGGTGCCACAACATTGTTTGTCAAGATTATTGGAAGCATTGGAGCTGTTGCTGCAGGGCTAGATTTAGGAAAAGAAGGGCCATTGGTACATATTGGAAGCTGCATTGCTTCCTTGTTAGGCCAAGGAGGCCCTGACAACTACCGGATCAAGTGGCGGTGGCTGCGATACTTTAACAACGACCGCGACCGCCGTGATCTGATTACCTGCGGCGCATCTTCGGGTGTTTGCGCGGCTTTCAGGGCCCCTGTAGGCGGAGTCCTGTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCATTGCTTTGGAGAACTTTCTTCAGCACTGCTGTGGTGGTGGTTATTCTAAGAGCTTTCATTGAACTGTGCCATGAAGGGAAGTGTGGTCTTTTTGGTGAAGGAGGGCTTATAATGTTTGATGTGAGCAATGTTAGTGTGAGTTACCATGTTATGGATATTATCCCTGTTGCCTTAATTGGAGTCATTGGAGGCGTTTTGGGAAGCCTTTATAACCATGTTCTCCACAAGGTCCTCAGGCTCTACAATCTCATTAATCAGAAAGGAAAAATTTATAAGCTGCTACTGAGTCTTTCAGTAGCATTGTTCACATCAGCATGCCAATATGGTCTGCCATTCCTTGCCAAATGCAGTCCTTGTGATCCATCGCTTCCAAAATCCATTTGCCCCACCAACGGAAGGTCTGGAAATTACAAACAATTCAACTGCCCAGACGGGCACTACAATGATCTTGCCACTCTGCTCCTCACCACCAACGACGACGCCGTTCGAAACATATTCTCTTCCAACACACCTAATGAATTCCAGCCATCCTCTATCCTAATCTTCTTTGCACTCTATTGCATCTTAGGACTAGTCACCTTCGGCATAGCCGTCCCCTCCGGCCTCTTCCTTCCCATAATTCTCATGGGCTCCGGCTACGGCCGCCTTCTCGCCATGCTCATGGGGCCTCACACAAACATTGATCATGGATTGTTTGCCGTTCTCGGTGCAGCCTCGCTTATGGCCGGTTCCATGAGGATGACTGTCTCACTCTGTGTCATCTTTCTCGAATTAACCAACAACCTTCTTTTACTCCCAATCACCATGTTTGTTCTCTTGATAGCCAAAACAGTTGGGGACAGTTTCAACCCAAGCATATATGAGATCATTCTGCACCTTAAAGGCCTCCCTTTCATGGATTCAAACCCGGAGCCATGGATGAGGAACCTAACAGTGGGAGAGCTTGTTGATGTGAAGCCAGCAGTGGTTACTCTCCGAGGGGTAGAGAAAGTTTGCAACATCGTTGAAGCGTTGAGGAACACAACTCATAACGGTTTCCCTGTGGTGGATGATGGGGTGGTGCCGCCGACGAGGCTTGTAACGGAAGCAAGAGAACTGCATGGAATGATCCTGAGAGCACATCTGATCCAAGTGCTGAAGAAGAGGTGGTTCTTGAAGGAGGCAAGGAGGAGAGAGGAATGGGAGGTGAGGGAGAAGTTTACATGGGTTGAGCTTGCAGAGAGAGAAGGGAAGATTGAAGAGGTGGCTATAACAAGAGATGAAATGGAGATGTATGTTGATCTTCATCCTCTTACTAACACAACTCCTTTTACGGTTTTGGAGAGTATGTCAGTTGCAAAAGCCATGGTTCTCTTCAGACAAGTTGGACTACGACATCTTCTTGTTGTTCCCAAGTATCAAGCATCCGGGGTATCTCCTGTAATTGGAATATTGACAAGGCAGGATCTACTAGCACACAATATATTGTCAGTGTTTCCTCATCTTGCAAAATCAAAAAAGAGGAACTGA 2367 0.4643 MGDESNCSMNMEEEVQGVEERDPESNTNTNNTPNPLHEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRTRSRAQVLQYIFLKWSLAFLVGLLTGVIATLINLAIENIAGYKLLAVVQYIHKERYMAGFLYFTGVNFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVILRAFIELCHEGKCGLFGEGGLIMFDVSNVSVSYHVMDIIPVALIGVIGGVLGSLYNHVLHKVLRLYNLINQKGKIYKLLLSLSVALFTSACQYGLPFLAKCSPCDPSLPKSICPTNGRSGNYKQFNCPDGHYNDLATLLLTTNDDAVRNIFSSNTPNEFQPSSILIFFALYCILGLVTFGIAVPSGLFLPIILMGSGYGRLLAMLMGPHTNIDHGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNPSIYEIILHLKGLPFMDSNPEPWMRNLTVGELVDVKPAVVTLRGVEKVCNIVEALRNTTHNGFPVVDDGVVPPTRLVTEARELHGMILRAHLIQVLKKRWFLKEARRREEWEVREKFTWVELAEREGKIEEVAITRDEMEMYVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILSVFPHLAKSKKRN* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2406 788 MobiDBLite consensus disorder prediction 1 40 - -
Ahy10g2406 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 605 772 - -
Ahy10g2406 788 SUPERFAMILY CBS-domain pair 588 771 IPR046342 -
Ahy10g2406 788 SUPERFAMILY Clc chloride channel 72 587 IPR014743 -
Ahy10g2406 788 PRINTS Plant CLC chloride channel signature 436 452 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy10g2406 788 PRINTS Plant CLC chloride channel signature 279 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy10g2406 788 PRINTS Plant CLC chloride channel signature 293 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy10g2406 788 PRINTS Plant CLC chloride channel signature 68 76 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy10g2406 788 PRINTS Plant CLC chloride channel signature 311 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy10g2406 788 MobiDBLite consensus disorder prediction 22 40 - -
Ahy10g2406 788 Gene3D - 588 777 IPR046342 -
Ahy10g2406 788 Pfam CBS domain 720 770 IPR000644 -
Ahy10g2406 788 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PRINTS Chloride channel signature 163 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PRINTS Chloride channel signature 572 586 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PRINTS Chloride channel signature 484 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PRINTS Chloride channel signature 516 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PRINTS Chloride channel signature 534 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 PANTHER CHLORIDE CHANNEL PROTEIN 28 786 - -
Ahy10g2406 788 CDD ClC_6_like 63 585 - -
Ahy10g2406 788 SMART cbs_1 721 774 IPR000644 -
Ahy10g2406 788 SMART cbs_1 607 666 IPR000644 -
Ahy10g2406 788 Gene3D Clc chloride channel 86 587 - -
Ahy10g2406 788 Pfam Voltage gated chloride channel 151 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy10g2406 788 ProSiteProfiles CBS domain profile. 718 784 IPR000644 -
Ahy10g2406 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 28 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2406 Ahy-Chr10 113606338 113611045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2406 19 785 Ion Channels AT3G27170 79.270 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2406 K05016 - gmx:778094 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2959 20 140367035 140371288 Ahy10g2406 10 113606338 113611045 hybridization