Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2396 ATGGCTTTTCAGCAATTTTTGAGGAGGAAACTCCAATCTCACTTTCATAATCCTACTCTTATGTCATCCATGATCACAAAGAAAGATGGTGTTGGTTCTACTGATGGAATCTCCTTTAGAGCACTTGCACTACTTGGAGCTAGTGTCACTGGGTTTTTCGGTTTTGCAACGACAGCATCAGCTGATGAAGCTGAGCATGGCCTAGCATGCCCAAGCTATCCATGGCCTCACAACGGCATCCTCAGTTCATATGATCATGCATCGATTCGTCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGACGAAGTAAAAGCTATGGCAGCTGAGATTGAGGTAGTTGACGGCCCTAATGATGAGGGTGAGATGTTCACACGCCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAAGTCTAATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCCCTTCTAACTGGTTATCGCGACCCTCCTGCTGGTGTCTCGATTAGAGAAGGCCTGCACTATAATCCTTATTTCCCTGGCGGAGCTATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCACAGATGGGGAAAGATGTTGTGTCATTCTTGTCTTGGGCCGCCGAACCCGAGATGGAAGAAAGAAAATTGATGGGATTTAAATGGATATTTGTTCTAACATTGGCATTGCTTCAAGCTGGCTACTACCGCCGCCTTAGGTGGTCCGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTCGTCAATTAG 915 0.4525 MAFQQFLRRKLQSHFHNPTLMSSMITKKDGVGSTDGISFRALALLGASVTGFFGFATTASADEAEHGLACPSYPWPHNGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEDEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLTLALLQAGYYRRLRWSVLKSRKLVLDVVN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2396 304 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 259 303 IPR021157 -
Ahy10g2396 304 SUPERFAMILY Cytochrome c 68 258 IPR036909 GO:0009055|GO:0020037
Ahy10g2396 304 ProSiteProfiles Cytochrome c family profile. 87 194 IPR009056 GO:0009055|GO:0020037
Ahy10g2396 304 PANTHER CYTOCHROME C1 8 304 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 171 195 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 240 259 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 209 220 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 93 112 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 220 239 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 259 274 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 73 92 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PRINTS Cytochrome C1 signature 138 158 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 Gene3D - 64 259 IPR036909 GO:0009055|GO:0020037
Ahy10g2396 304 Gene3D - 260 303 - -
Ahy10g2396 304 Pfam Cytochrome C1 family 75 291 IPR002326 GO:0009055|GO:0020037
Ahy10g2396 304 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 8 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2396 Ahy-Chr10 113521922 113527306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2396 3 304 Chloroplast and Mitochondria Gene Families AT3G27240 83.553 1.41e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2396 K00413 - gmx:100803087 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2946 20 140275190 140280522 Ahy10g2396 10 113521922 113527306 hybridization