Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2311 ATGGAAGCACAAGCGATTCACCATCAATCTCACGCTTCTCCTGTTCAAGGAATGGATCGTGTGGTGGCAACGGTGAGCGGCTACCATGGCTTCGAGCGGTTCAATCTCATCAGGCTGATTTCACATGCCGGCGCCAATTACGTTGGGTCAATGTCGAAATCGATCACGCATCTGATTTGTTGGAAGTTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAATCATCGATGGATTGAAGACTGCATTAAAGAAGGAAGGCGTGTGCCAGAAGAGTCATATATCTTGCAAAGTGGACATGAAGTTGGGCCATTGTTACTGGAAGTTCCAATCAGTGTTCCAGCAACTAGATTGACAAAAAATAAAGTTATAACTGATCAAATATATGATATTGACTCTGGAGAGCAAACAACTGAGATCAGTTTTGGAGCTTCAGAAAATTTTGTTTGGGAAGATTTAAATACAAAGCATGACAAGTCCAGTGCTTATCCTTCTAGACGGTCAAGGAAAGGAAAAAGAAGTATCTGTGCTGGTAATAATGGAGGTTGTACTGTGGCTGAACCTTCTCGTAAAGGCAGAAGGATTGTAAACAATATTGTTGATGAAGTGGTGTTGGACCCTTTATTGGATGTGGTCCCGGACAACCACCATAATAGATGGGATAGACGAAACCATGATGCTGCAGCTACCACAAGCCTTTGTAGTGGTGTCAATAAGGGAAATACAGTTGAAAATGGAGAAACAACAGATGCCGGATTGTCTACTCAAAATGAAACTATCAATGGAACTTCAGATAGCATTGAAGAGATCAATCATTCGAACAATGTATCAGCTCTTAGAAGTTCAACTTTCTCTGTAGAGTATCATCTACCTATGACTCAAATGTCAACAGATATATGTTCTTCTGCTGAAAAGTTCACAGATGATTGTCAGCATGAAGATGTTGCTGGCTTACCTACATCCAGTGAGTTATCCTGTGTTATCTGTCACGCAGATTTCAGCGCAACAAGGGGAATTCTTCCATGTGGACATCGATTTTGTTTTGAATGCATTCATAGTTGGGCTAATCATAGGACTTCAACGAGGAAAAATGCAACCTGTCCTTTGTGCAAGGCAAGTTTTCAGTCGATCAAGAAGGTTGAGCATGCAGATAGAATTGATCAAAAAGTATACACCCAGACAGTCCCATGTAACAATTCAGCTGAAGATGTTTTTATCGCTCCACATCAAGGATTGCCCGATTACCCTTTTGAGTCCTCAGAGGCAAACTCTTGTGTAGTTTGTGGTGGTTTGGAACCAGAGGATCTCCTTGACAGGTGTGATATTTGCCAAACTCGAAGAATCCATATCTATTGCCTGGACCCTCCTATAACTCCATGGATATGCAATCCCTGCAACCAACTACGGAGAAGTTACTATGATCGCTCGTATTAA 1449 0.4141 MEAQAIHHQSHASPVQGMDRVVATVSGYHGFERFNLIRLISHAGANYVGSMSKSITHLICWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGHEVGPLLLEVPISVPATRLTKNKVITDQIYDIDSGEQTTEISFGASENFVWEDLNTKHDKSSAYPSRRSRKGKRSICAGNNGGCTVAEPSRKGRRIVNNIVDEVVLDPLLDVVPDNHHNRWDRRNHDAAATTSLCSGVNKGNTVENGETTDAGLSTQNETINGTSDSIEEINHSNNVSALRSSTFSVEYHLPMTQMSTDICSSAEKFTDDCQHEDVAGLPTSSELSCVICHADFSATRGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADRIDQKVYTQTVPCNNSAEDVFIAPHQGLPDYPFESSEANSCVVCGGLEPEDLLDRCDICQTRRIHIYCLDPPITPWICNPCNQLRRSYYDRSY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2311 482 MobiDBLite consensus disorder prediction 163 188 - -
Ahy10g2311 482 SUPERFAMILY FYVE/PHD zinc finger 418 473 IPR011011 -
Ahy10g2311 482 ProSiteProfiles Zinc finger RING-type profile. 331 376 IPR001841 -
Ahy10g2311 482 ProSitePatterns Zinc finger RING-type signature. 347 356 IPR017907 -
Ahy10g2311 482 CDD RING-HC 331 375 - -
Ahy10g2311 482 Pfam twin BRCT domain 21 83 IPR001357 -
Ahy10g2311 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 481 IPR013083 -
Ahy10g2311 482 ProSiteProfiles BRCT domain profile. 10 101 IPR001357 -
Ahy10g2311 482 MobiDBLite consensus disorder prediction 243 262 - -
Ahy10g2311 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 414 IPR013083 -
Ahy10g2311 482 SMART BRCT_7 15 91 IPR001357 -
Ahy10g2311 482 PANTHER F5A8.9 PROTEIN 154 479 - -
Ahy10g2311 482 PANTHER F5A8.9 PROTEIN 14 122 - -
Ahy10g2311 482 SUPERFAMILY RING/U-box 324 383 - -
Ahy10g2311 482 SMART ring_2 331 375 IPR001841 -
Ahy10g2311 482 Pfam Ring finger domain 330 376 IPR001841 -
Ahy10g2311 482 Gene3D BRCT domain 15 100 IPR036420 -
Ahy10g2311 482 SUPERFAMILY BRCT domain 8 102 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2311 Ahy-Chr10 112560785 112565455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2311 55 107 Core DNA Replication Machinery Family AT4G02110 53.704 2.28e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2311 - - aip:107621679 729.554