Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2298 ATGAATGGCACACTTCCAAAGTCCCGAACCGAAGACACACTCGTTTGCGTACTGCTTCTGCCTCAGTTCCTTCCTCTGCAACCACCTCTCCAGTCCTCTCTCTCTTTCTCTCTCACTCTGCTTCACGTCTCCCTGCCGCCAGCACCTCTCTTCCGCTGTCACCGTCGCCATCTTCCTGCAGACTACAAGGACAGTTTAAGTTCTACACTGGATACCAATATCTTGATAAATTATAATCATCCTAATTTTTTTAGGCTTTGCTGTAAGAAAGAAGGGAAGGAACAATTAATCATGGGTTGGGGTCACATTGGAAGAAATGGCGGTGATGAAGCTGGTCCTAGCAGCACCGTCCCCACAACCACCGAGCCACGGCGGTTCCCACTGGCTGCTCAGCCGGAGATGATGCGTGCTGCTGAGAAGGACGAGCAGTATGCCTCTTTCGTCTATGAAGCCTGCCGCGACGCCTTCCGGCACCTCTTTGGTACAAGGGTTGCTGTTGCTTATCAAAACGAGACAAAACTCTTGGGACAAATGTTGTACTATGTTCTCACAACAGGATCAGGGCAGCAGACACTTGGGGAGGAGTACTGCGACATCACTCAGGTTGCTGGTCCTTATGGGCTGCCTCCTACCCCTGCAAGGCGTACTCTTTTCATTGTATACCAGACAGCGATTCCTTATATTGCAGATCGTATTAGTTCACGAATTGCTTCCGGTGGCATTGCCCTCGCTGATTCAGAGTTTGCGGAGAGTTATGGTGATAGTGCTATCAGGAGCAGTAATTCACAGGATTCTGTGGCTAGTCCTTCAACATCAGGACAACATAGTACAACTCTTTCAAGATTGAAGCAAAAACTGAGTGGTTTTTGGTTGCATGTGGTTCAGCAATGGCCTGCGATGCTCCCTTTTGTACGTGAATTGATACAGCTGGTTCTTCGTGCTAATCTAATGCTGTTCTACTTTGAAGGCCTTTATTATCATATATCCAAGCGTGCTGCAGGCATTCGTTATGTTTTCATTGGAAAACCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCGGAACGGCTACGTCGAAGAAATTTATCTTCAATTGCTGGCTCAGTTCATCAGGCATCCTTTGCAACCCAACAGAGATCAGCAGGACATGGTTTGCCTGTTCTGAATGAAGAAGGTAATCTGGCATCTCTAGATACTGACGAAGGAGGTTGGGTCTTTGATTCTTCATCTTCTGAGTATGGAACTAGCAAATGCACTCTTTGCCTAAGTAATCGTCAACATCCAACAGCTACATCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAATGTCCTCTTTGCCGCACCCCAATAACACATTCAAGTCTAGTTTGTGTGTATCATTCAGACTTCTAG 1455 0.4639 MNGTLPKSRTEDTLVCVLLLPQFLPLQPPLQSSLSFSLTLLHVSLPPAPLFRCHRRHLPADYKDSLSSTLDTNILINYNHPNFFRLCCKKEGKEQLIMGWGHIGRNGGDEAGPSSTVPTTTEPRRFPLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLFIVYQTAIPYIADRISSRIASGGIALADSEFAESYGDSAIRSSNSQDSVASPSTSGQHSTTLSRLKQKLSGFWLHVVQQWPAMLPFVRELIQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKPSNQRPRYQILGVFLLIQLCVIAAERLRRRNLSSIAGSVHQASFATQQRSAGHGLPVLNEEGNLASLDTDEGGWVFDSSSSEYGTSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2298 484 PANTHER PEROXISOME BIOGENESIS FACTOR 10 122 481 - -
Ahy10g2298 484 Pfam Zinc finger, C3HC4 type (RING finger) 428 473 - -
Ahy10g2298 484 Pfam Pex2 / Pex12 amino terminal region 141 371 IPR006845 -
Ahy10g2298 484 ProSiteProfiles Zinc finger RING-type profile. 430 468 IPR001841 -
Ahy10g2298 484 SUPERFAMILY RING/U-box 423 473 - -
Ahy10g2298 484 ProSitePatterns Zinc finger RING-type signature. 445 454 IPR017907 -
Ahy10g2298 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 481 IPR013083 -
Ahy10g2298 484 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 122 481 - -
Ahy10g2298 484 CDD RING-HC_PEX10 429 468 - -
Ahy10g2298 484 SMART ring_2 430 467 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2298 Ahy-Chr10 112417473 112423373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2298 377 480 C3H Transcription Factor Family AT3G58030 29.358 1.35e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2298 K13346 - gmx:100783914 667.922