Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2266 ATGAGTATCATGAAGTCATTGGATCACTGGAGGAGTTACTTCAGGTCTTGTTCATCTTCATCTGACATATTTGAAATAATTGACCATGCGATCATGGTGGCGGCTTCTGATTGCCCCAAGGAGTTCAGGCTGAGAAGGGACCATATTGCTGAGATGCTCTTCTCTTGCAAGCAAACAAGGTGTGTGGGTTGTGACAGGGTTGAGCTCTGTGTCCCTGTTGATGGTGCTGATGGTGGTGGAGCTCGTGGTGGTGGTGATGATGATGGTGCCTACAAGAGCAGTGGTTTTCATCACAATCGGGATGGTGTTGTTGAGTTTGAAGCTGGGGCAAGCAAGGAGAGCAAGGTCAATAGCTCAAGGGGTGATATTGATGATCATGGTGACATGGATGTGAATAGGGTCCTTAGCAATTATAGCTTTGGTGAAGCTGAGGCATTGACTGATGAAATGGAAGAACAGTCTCAGTTTGTTGCTGAGGTCTTGAGGATCAGAGACATTCTCCATAACCGTCAAGAAGAGTCAGATGCAGTATTGTTTGAATCACTGAGGAGGCTGCAACTGATGGAACTCACTGTTGATTGTCTCAAGGCAACTGAGATTGGAAAGGCTGTTAATCCTCTTAGAAAGCATGCTTCAAAGGATATCCGTCAACTCGCACGAAAGCTTATTGATGATTGGAAAGAAATGGTAGATGAGTGGGTCAAGGCCACAGCTATTACAGGATCAGAAGGCACTCCAGATTCTGTAAATCCATCAGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTTTGGACGAAGGCGCTTTCTTGGTAGCTTCAACCGGTTCAATTGAACTCTCTCAGTTCTTTGATGGCATGGATGATATCGGAAGATGTTTTTCAGATCCTCGACAAAGTGGGCAAGTCAAGAACCGAGAAAATGGCAGAAAGCCATCAATGGACATCCAACATATGGAAAAAAGGAAACCACAGGCTTCAAATGACACTGCCAAGGATAGTAAGAGCCAGCTGGTTAAGAGAAATGAGGCCACAGTGAAGCCAAGTAGACCGGTAGCCGCTGATTCCGGTCCTGGCAGACCACCAAAGTCAAGCATGCAGCGAAAAAGCAATGTCGAGCCTAGAACAGAGAATGGTACAGTCACAAGGAAGCCTCCGGTTGACCAGCAAGATAAATCGAATTGCTCGGACGATGTGGATGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGTTCGATATCAAGAAGCTGAAAAAGCTAAGAGGCAACGAACTATACAAGTAATGGAATTGAATGATCTCCCAAAGCAAGGAGCCAGCCAGCGAGGTCCTCAGTTCAAAGCCGGAAACCTTAACCGGCACTGGGCCAACGGTCGAAGGTAG 1383 0.4649 MSIMKSLDHWRSYFRSCSSSSDIFEIIDHAIMVAASDCPKEFRLRRDHIAEMLFSCKQTRCVGCDRVELCVPVDGADGGGARGGGDDDGAYKSSGFHHNRDGVVEFEAGASKESKVNSSRGDIDDHGDMDVNRVLSNYSFGEAEALTDEMEEQSQFVAEVLRIRDILHNRQEESDAVLFESLRRLQLMELTVDCLKATEIGKAVNPLRKHASKDIRQLARKLIDDWKEMVDEWVKATAITGSEGTPDSVNPSVVDEEEGLPSPPLDEGAFLVASTGSIELSQFFDGMDDIGRCFSDPRQSGQVKNRENGRKPSMDIQHMEKRKPQASNDTAKDSKSQLVKRNEATVKPSRPVAADSGPGRPPKSSMQRKSNVEPRTENGTVTRKPPVDQQDKSNCSDDVDAKLEATKRKLQVRYQEAEKAKRQRTIQVMELNDLPKQGASQRGPQFKAGNLNRHWANGRR* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2266 460 Coils Coil 400 423 - -
Ahy10g2266 460 MobiDBLite consensus disorder prediction 303 340 - -
Ahy10g2266 460 MobiDBLite consensus disorder prediction 241 266 - -
Ahy10g2266 460 Pfam TFIIS helical bundle-like domain 182 230 IPR017923 -
Ahy10g2266 460 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 459 IPR044805 -
Ahy10g2266 460 CDD TFIIS_I 158 231 - -
Ahy10g2266 460 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 155 237 IPR035441 -
Ahy10g2266 460 MobiDBLite consensus disorder prediction 432 460 - -
Ahy10g2266 460 SMART TFS2_5 157 232 IPR003617 GO:0005634
Ahy10g2266 460 MobiDBLite consensus disorder prediction 363 389 - -
Ahy10g2266 460 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 148 242 IPR035441 -
Ahy10g2266 460 ProSiteProfiles TFIIS N-terminal domain profile. 158 233 IPR017923 -
Ahy10g2266 460 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 459 - -
Ahy10g2266 460 MobiDBLite consensus disorder prediction 291 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2266 Ahy-Chr10 111892134 111895965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy10g2266 Med26 1.50E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2266 - - gmx:100799367 554.288