Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2250 ATGGATAACGAGATCGACGTTCCTCCGTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAAGGATCCAGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACATGGCTCTTCTCCGCCAAGAACAACACCTGCCCCGTAACCAAGCAACAACTATCTTCTTCTGATTTCTCCGATCTAACTCCAAACCACACTCTTCGCCGATTGATTCAGTCATGGTGTACCATCAACGCTTCCTACGGCATCCAAAGGATTCCCACACCTAAACCACCGGTCAACAGAAACCAGATCTCAAAGCTCCTCAAAGATGCTTCCCGTTCCACCACCGTCAACCAGATCAAGTGTCTCAGAAAGCTCAAATCCATTGCTTCTGGAAGCGAAACAAACAAAAGGTGCATGGAAGCTGCTGGTGCCGTTGACTTCTTGGCTTCCGTTGTCAACAACAACATCGATTGTTCTTCTTCTGATCATCACGACGACGATGATGATGATGAAGCTTTGAAGAATAGTCCCTCCGATGAAGCACTAAGCATGCTCTACAATCTTCATGTATCCGAAGCTGGATTGAAGAATCTCATAGGATTCAAGAACGGAGAGTTTGTGAATTCTCTAACGAGGATTTTGCAGAAAGGAACATACGATTCAAGAGCTTACGCAGTCTTCATGCTGAAATCAATGTGTGAGGTGGCTGAACCGGTTCACCTTCTTCACTTAAGAACCGAGTTATTCGTGGAGCTAGTTCAGGTTTTGAAGGACCAGATTTCTCACAAGGCAACAAAAGCCGCCCTCCACGCTCTGATCCAGATCTCTTCGTGGGGGAGAAACAGGATCAGAGCGGCAGAGGCCGGCACAGTTGCCGTTCTCGTGGAGCTTCTTCTCGAAACTAAAGAGAGGAAGCCCTGCGAGATGATGCTAGTTTTGTTAGAGGTGCTTTGCCAGTGTGCGGAGGGAAGAGCGGAGCTATTGAGCCATGGAGCGGGATTGGCCATTGTTTCGAAGAAGATTCTTAGGGTTTCGACGATGGCGAACGATAGGGCGGTGAGGATACTTTTGTCCGTGGCGAAATTCTCGGCGACGCCGGTGGTTGTTCAAGAGATGCTGAAGCTTGGTGTGGTGGCGAAGCTGTGCTTGAGTCTTCAGGTGGATAGTGGAAGCAAGACGAAGGAGAAGGCGAGGGAGATTCTCAAGATTCATGCTAAGGCATGGAAGAATTCTCCATGCATACCTACCAATTTGGCTTCTGCATACCCGGCTTTTGCTTAA 1275 0.4863 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSAKNNTCPVTKQQLSSSDFSDLTPNHTLRRLIQSWCTINASYGIQRIPTPKPPVNRNQISKLLKDASRSTTVNQIKCLRKLKSIASGSETNKRCMEAAGAVDFLASVVNNNIDCSSSDHHDDDDDDEALKNSPSDEALSMLYNLHVSEAGLKNLIGFKNGEFVNSLTRILQKGTYDSRAYAVFMLKSMCEVAEPVHLLHLRTELFVELVQVLKDQISHKATKAALHALIQISSWGRNRIRAAEAGTVAVLVELLLETKERKPCEMMLVLLEVLCQCAEGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVAKFSATPVVVQEMLKLGVVAKLCLSLQVDSGSKTKEKAREILKIHAKAWKNSPCIPTNLASAYPAFA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2250 424 PANTHER WDSAM1 PROTEIN 3 421 IPR045185 GO:0061630
Ahy10g2250 424 Gene3D - 96 411 IPR011989 -
Ahy10g2250 424 CDD RING-Ubox_PUB 11 54 IPR045210 -
Ahy10g2250 424 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Ahy10g2250 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 421 - -
Ahy10g2250 424 SUPERFAMILY ARM repeat 101 389 IPR016024 -
Ahy10g2250 424 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Ahy10g2250 424 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Ahy10g2250 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Ahy10g2250 424 SUPERFAMILY RING/U-box 4 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2250 Ahy-Chr10 111665831 111667402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2250 1 422 U-box Gene Family AT3G52450 56.208 2.65e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2250 - - adu:107471540 782.326