Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2235 ATGAACGACTTGCTCTCTCCACCGCGGGACAAGAACCAGCATGTCATCGAGATGGCGGAAACGATGCCGTCCGTCGAGAACAACCTCAACAAGTTCTTCGAGGAAGTTGAGTCCCTAAAACAGGAGCTGAAAGAGCTCGAGAACATCCACAACAGCCTCCGAGTCTCCAACGAGAAGAGCAAGGCTCTTCACACCGCAAAGGATGTGAAGGACCTTCGCTCTCGTATGGATGCTGATGTCACCACCGCCCTCAGGAAGGCCAGGGTCCTCAAGGCCCGCTTGGAGGCCCTTGACCGGGCTAACGAGGCTAGTCTGTCCGTCCCTGGCTGCGGGCCTGGCTCTTCCTCTGACCGGACACGGACGTCTGTGGTGAATGGACTGAGAAAGAACCTCAAGGAGTCAATGGAGAGTTTCAACAAACTGAGAGATCAGATATCGTCGGAGTATAGAGATACCGTACAACGTCGGTACTACACCGTCACCGGCGAGAATCCTGATGACAAAACCATTGACCTTCTCATCTCTACCGGTGAGAGTGAAACTTTCCTCCAGAAAGCAATCCAACAACAAGGGAGAGCGACAGTGATGAACACAATTCAAGAGATTCAGGAGAGGCACGGTGCGGTGAAAGAGATAGAGAGGAACCTGAACGAGCTTCACCAGGTGTTCTTGGACATGTCAGTGTTGGTCCAAACACAGGGTGAACAGCTCGACGACATTGAGAGCCACATGGCACGTGCTAATTCGTACGTTAGGGGTGGTGTACAGCAACTCCAAGTTGCTAGAAAGCACCAGAAGAACACCCGCAAGTGGACCTTTATTGCCATCATATTGCTTCTCATAATCGCCTTGGCTATAATTCTTCCCATAGTTTTGAGAAACTGA 885 0.5141 MNDLLSPPRDKNQHVIEMAETMPSVENNLNKFFEEVESLKQELKELENIHNSLRVSNEKSKALHTAKDVKDLRSRMDADVTTALRKARVLKARLEALDRANEASLSVPGCGPGSSSDRTRTSVVNGLRKNLKESMESFNKLRDQISSEYRDTVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRATVMNTIQEIQERHGAVKEIERNLNELHQVFLDMSVLVQTQGEQLDDIESHMARANSYVRGGVQQLQVARKHQKNTRKWTFIAIILLLIIALAIILPIVLRN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2235 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Ahy10g2235 294 Coils Coil 124 148 - -
Ahy10g2235 294 PANTHER SYNTAXIN 9 289 IPR045242 -
Ahy10g2235 294 Gene3D - 188 292 - -
Ahy10g2235 294 SMART tSNARE_6 194 261 IPR000727 -
Ahy10g2235 294 CDD SynN 29 186 IPR006011 GO:0016020
Ahy10g2235 294 Coils Coil 22 56 - -
Ahy10g2235 294 PANTHER SYNTAXIN-121 9 289 - -
Ahy10g2235 294 SMART SynN_4 24 150 IPR006011 GO:0016020
Ahy10g2235 294 Pfam SNARE domain 235 287 IPR000727 -
Ahy10g2235 294 SUPERFAMILY t-snare proteins 27 254 IPR010989 GO:0016020|GO:0016192
Ahy10g2235 294 Pfam Syntaxin 31 234 IPR006011 GO:0016020
Ahy10g2235 294 CDD SNARE_syntaxin1-like 198 259 - -
Ahy10g2235 294 Gene3D - 25 154 - -
Ahy10g2235 294 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2235 Ahy-Chr10 111362978 111365769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2235 28 272 SNARE and Associated Proteins AT3G11820 71.020 4.26e-129 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2235 K08486 - gmx:100808718 421.394