Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2233 ATGGCTGCTGCTACAGCTTCTGTTTCCTCTTCTTCTATCTGCAACAGAATCTACAACCCCACCTTCAGCCACACTTCCATTTCACTCACCACCAACTTCCCTCAGAGACCCATCTCCTACAAACCCCTCACCTTCAACCTCAAGCCCCAAAGTTTCAATCTTTTCCCTCTCCCTCTTCACCCTTCCTCTGCTGCATTCGATGGATTCGAAGCCTCTCAAGAACAAGAACAAGAAGAGACCTCTGAAACACCCCAACAACAAGAAGAGCAAAGGGTTTCAGATTCCAACGACTCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATGACCTCCAACGAATTGTCCGAGCTCTTTGGAGAAGCTGGCACTGTTGTGTCTGTTGAGGTTGTGTACGATCGTGTCACGGATAGAAGTAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGGGGATGCTCAAGAAGCAATTCGAATGTTTGATGGCTCGCAAGTTGGCGGTAGGACCGTTAAGGTAAACTTCCCGGAAGTGCCCAAGGGAGGTGAAAGGTTGGTAATGGGGCCGAAAATTCGGAACAACTCCAGAGGCTTTGTAGACAGCCCTCACAAGCTCTATGCTGGAAACCTTGGTTGGAGACTGACTTCAGAGGGTCTTAGAGATGCCTTCGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGAGACTCCGGAAGATCTCGAGGTTTTGGATTCGTTACTTTTCAAACTGCGGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGTGTGGAGATTGAAGGTCGACCTTTAAGGTTGAATTTGGCTGCAGAGAGAGCACCTTCATCTCCTCCAAGAAGTAATGTTGATAGCTCAGAGTTGTATTCTAGTGCCAGTACATGA 909 0.4785 MAAATASVSSSSICNRIYNPTFSHTSISLTTNFPQRPISYKPLTFNLKPQSFNLFPLPLHPSSAAFDGFEASQEQEQEETSETPQQQEEQRVSDSNDSGRLYVGNLPYSMTSNELSELFGEAGTVVSVEVVYDRVTDRSRGFAFVTMGSVGDAQEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNSRGFVDSPHKLYAGNLGWRLTSEGLRDAFAEQPGLLSAKVIYERDSGRSRGFGFVTFQTAEDVEAALNAMNGVEIEGRPLRLNLAAERAPSSPPRSNVDSSELYSSAST* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2233 302 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 4 289 - -
Ahy10g2233 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Ahy10g2233 302 Gene3D - 68 192 IPR012677 -
Ahy10g2233 302 PANTHER OS02G0815200 PROTEIN 4 289 - -
Ahy10g2233 302 SUPERFAMILY RNA-binding domain, RBD 199 289 IPR035979 GO:0003676
Ahy10g2233 302 MobiDBLite consensus disorder prediction 286 302 - -
Ahy10g2233 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 274 IPR000504 GO:0003723
Ahy10g2233 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 171 IPR000504 GO:0003723
Ahy10g2233 302 CDD RRM_HP0827_like 100 176 - -
Ahy10g2233 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Ahy10g2233 302 Gene3D - 193 292 IPR012677 -
Ahy10g2233 302 SUPERFAMILY RNA-binding domain, RBD 94 176 IPR035979 GO:0003676
Ahy10g2233 302 SMART rrm1_1 203 276 IPR000504 GO:0003723
Ahy10g2233 302 SMART rrm1_1 100 173 IPR000504 GO:0003723
Ahy10g2233 302 MobiDBLite consensus disorder prediction 69 100 - -
Ahy10g2233 302 MobiDBLite consensus disorder prediction 279 302 - -
Ahy10g2233 302 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2233 Ahy-Chr10 111356306 111358246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2233 99 297 Eukaryotic Initiation Factors Gene Family AT3G16380 28.643 1.59e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2233 - - adu:107471351 566.229