Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2222 ATGGGTGAAAGGTGTGACTTTCTTGAAGAAATCTCCACAAAAAGAGCAGATTGGATCATTAAGGTTTATGTTGTAAGGATGTGGTATGGTCCTCCACGCCCAAATAGTAGTGAAGCTGGTGCTTTAGAGATTGCATTGCACGACTTGAAGGGCAGCAGGATACACTGCACGATTCCAAAATCAGTGGTGCGACTGTTCCGGCCCATTCTGTCGGAGGGGCAGCTATATAGTATTTCTTCTTTTATAGTCCAAAAGAACAATATGTGGATGAAGTGCAGCTCGCTTCAGTATAGGATCACCTTATTACAAAGAAGCATGGTTGTTCATATCCCTCAACCGCTCTTTCCGTTTCAGCCATTTACATTTAGGAGTATTGCGTCTATCCTGCAAGAAGAAAGGCTTGATCAGAATTTTCTTTTTGATGTGCTAGCAGAGGTTATAGGGAAGGAGGACCCAAAGGATTTGGTTACCAAGCAAGGGCAGGAAAGCAAGCGGTTAGGGCTGTTAGTGGAGGACCTTGAGAAGAATTCTATCAGTTGTACCCTATTTGGTTCACTGGTAGATTTGATCCAACCCTATTTAGATGGTGATAAGACTGAACCTCTCATAGTTGCATTCCAACTATTTAGAGCAAAGGAATGGAATGGGAAGATTAGTATTCAGAGTAGTTTTGACACATCTAACATCCACATAAATCCCAATATTAAAGAGGCCGAACTATTTAAAAAGAGTTTGGTGGACAGCACTCAAGGTGATAGTTGTTTTTCATCCCAGAGGATAAGTCATATGTCATCCAGTTCATATCGATCTGCTATTGATGAGCTCAGAAAAGGGATCTGCAAAGTTGAAACAATAGACAGTGTGTTGAATGCAAGTGATGTTGGGTTTAAATGGATACTATGTACGATTGTTGACTTTGATGTCGGGAGGAATGATTGGTTCTTCATAGCTTGCAAGTATTGTCATAAAAAATGCAAAAAGATAGAGGAGAGATTTGAATGTGACCATTGCCGCAAGAAGGCCGTTCAGGTAGACTTGCGGTATAAGCTTCAAGCTTATGTTTCCGATGCAACTGGAAGTATGTGTGTAGTGTTGTGGGATACCGAAGCAAGCCAAATTGTAGGGTTGAGTGCAACCAAAGTCAGAGAAACCTACAGTCAGGATGATTCTGATGATTCTTACCCGGAGGTGTTGAAGACGGCCTTGGACATGAAGTTGCTATTAAGGATTAATGTGAAAAGTAGTAATTTGAGTGGTAATGAAAATGTCTATAATGTCACAAAAGCTTGCCTTGATGAGCACCTTATCCATAAATACAGCCAGTCTGTAAATGAACAATCTACGAAGGGGTTGGATAATGTTACTAGCTTGGATTGTACTACTGATGTTGTTTATCTTGGTGATGATGAATCTGTCCAAGGTGGACAAGAATCTGTCAATGAGTCTAAGACAGTTACCAGCAGCAAGGGAAGAGCTAAAAGGATTGATGCAGGAATTATAGGAGTAGTTGCGAAAGACTTGGAAAGTATACCCGTAGGGCAGTTGTCAAGTACTAAGAAGCCAAGGTTGAGTATTAAGAAAGAAAAGACTCTCTAG 1596 0.4091 MGERCDFLEEISTKRADWIIKVYVVRMWYGPPRPNSSEAGALEIALHDLKGSRIHCTIPKSVVRLFRPILSEGQLYSISSFIVQKNNMWMKCSSLQYRITLLQRSMVVHIPQPLFPFQPFTFRSIASILQEERLDQNFLFDVLAEVIGKEDPKDLVTKQGQESKRLGLLVEDLEKNSISCTLFGSLVDLIQPYLDGDKTEPLIVAFQLFRAKEWNGKISIQSSFDTSNIHINPNIKEAELFKKSLVDSTQGDSCFSSQRISHMSSSSYRSAIDELRKGICKVETIDSVLNASDVGFKWILCTIVDFDVGRNDWFFIACKYCHKKCKKIEERFECDHCRKKAVQVDLRYKLQAYVSDATGSMCVVLWDTEASQIVGLSATKVRETYSQDDSDDSYPEVLKTALDMKLLLRINVKSSNLSGNENVYNVTKACLDEHLIHKYSQSVNEQSTKGLDNVTSLDCTTDVVYLGDDESVQGGQESVNESKTVTSSKGRAKRIDAGIIGVVAKDLESIPVGQLSSTKKPRLSIKKEKTL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2222 531 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Ahy10g2222 531 CDD RPA1_DBD_B_like 156 245 - -
Ahy10g2222 531 SUPERFAMILY Nucleic acid-binding proteins 120 244 IPR012340 -
Ahy10g2222 531 CDD RPA1_DBD_A_like 20 99 - -
Ahy10g2222 531 Gene3D - 115 253 IPR012340 -
Ahy10g2222 531 Pfam Replication factor-A C terminal domain 310 422 IPR013955 -
Ahy10g2222 531 Pfam Domain of unknown function DUF223 44 109 IPR003871 -
Ahy10g2222 531 PANTHER REPLICATION FACTOR A 1, RFA1 45 427 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy10g2222 531 Gene3D - 6 109 IPR012340 -
Ahy10g2222 531 Gene3D - 262 440 IPR012340 -
Ahy10g2222 531 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 45 427 - -
Ahy10g2222 531 SUPERFAMILY Nucleic acid-binding proteins 295 429 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2222 Ahy-Chr10 111154277 111157078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2222 1 412 Core DNA Replication Machinery Family AT5G08020 25.891 1.28e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2222 - - ahf:112716567 1036.56