Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2204 ATGGGAAGAGGGAAGGTGGAGTTGAAGCAGATAGAGAACAAGATCAGGCGTCAAGTAACGTTCTCGAAACGGAAAACGGGGCTGAAGAAGAAAGCGCATGAAATCTCCCTTCTCTGTGATGCTCAACTTGCATTCATTATCTTCAACACCACAGGCAAACTCTCTCACTTTTCATCTCATTCCAGCGTGGAAAACATCCTTGAACGATATGAGAGACATGTTAATGCATTGAAAATCAATGGAGGTGAAAGTGGATCACAGGGAAACTATGCATTGGAATGTTTGAAACTCAGGAGCAAAGTTGAAGCCTTAGAGAGAAATACAAGGAACTTGGCGGGAAATGATCTTGATTCATTGAGCCTGAGAGAGCTTCAGAATTTAGAGCATCAGCTTGAAGCATCTTTAAAGCGTATCAGAGTAAAAAAGAACAATAATATGAAAGAATCCATCTCGTTGCTGCATAAAAAGGCAAAGGCATTGCAGGAACGCAAAAGCACGTTAACAAAAGAGATTAAAGATAAGAAGACAGTGGTGGTTGAAGGTCCAGAGTGCTGGGTAGAACAAACCCTAATGCAATCTCCCCAAAGATCACTTTCTGCTTTAACACTCGGGTATTTATTCTCTTCGAACTGTCCTAGTAAAAGTACTAGAGTGAACACTTAG 663 0.4118 MGRGKVELKQIENKIRRQVTFSKRKTGLKKKAHEISLLCDAQLAFIIFNTTGKLSHFSSHSSVENILERYERHVNALKINGGESGSQGNYALECLKLRSKVEALERNTRNLAGNDLDSLSLRELQNLEHQLEASLKRIRVKKNNNMKESISLLHKKAKALQERKSTLTKEIKDKKTVVVEGPECWVEQTLMQSPQRSLSALTLGYLFSSNCPSKSTRVNT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2204 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy10g2204 220 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 208 - -
Ahy10g2204 220 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Ahy10g2204 220 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Ahy10g2204 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Ahy10g2204 220 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g2204 220 Coils Coil 121 177 - -
Ahy10g2204 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy10g2204 220 PANTHER MADS BOX PROTEIN 1 208 - -
Ahy10g2204 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy10g2204 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy10g2204 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy10g2204 220 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Ahy10g2204 220 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2204 Ahy-Chr10 110824806 110846673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2204 1 178 MADS-box Gene Family AT1G26310 51.934 2.28e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy10g2204 K-box 3.50E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2204 K09264 - gmx:100820188 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3055 14 139331702 139344462 Ahy10g2204 10 110824806 110846673 PCT
Ahy4g2695 4 124965823 124978163 Ahy10g2204 10 110824806 110846673 PCT