Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2193 ATGAGGCTTGTCATCTTAGTTCTTTGTGTAATTGTGTTGTTCTCCAATGCAGGTGCCTATGATCCTTTGGATCCAAATGGGAATGTAACAATCAAATGGGATATAGTGTCTTGGACTCCAGATGGCTATGTTGCGGACGTAACGTTGTACAACTTCCAAATGTTCCGGCACATAATGAACCCTGGATGGACCCTGGGATGGACATGGGCAAAGAAAGAAGTGATATGGTCTATGATAGGAGCTCAAACAACAGAGCAAGGTGACTGCTCAAAGTTCAAAGGGAACATACCTCACTGCTGCAAGAAAATCCCAACAGTTGTGGACTTGCTTCCTGGTGTCCCTTACAACCAGCAATTCACAAATTGCTGTAAGGGTGGAGTTGTTGCTGCGTGGGGCCAAGACCCTTCACAGGCTATCTCTTCATTCCAAATAAGTGTTGGCCAAGCCGGTACCTCCAACAAGACGGTTAAACTCCCCAAGAACTTCACTCTCTTGGCTCCCGGACCGGGATACACTTGCGGCCGGGCCAAGGTTGTTCCTTCCACCACTTTCCTTACTCCGGACAAGCGCCGCAAGACTCAAGCCCTGATGACATGGAATGTTACCTGCACATACTCACAATTTCTAGCAAGAAAGAACCCTGCTTGTTGTTTATCTTTGTCATCTTTCTACAATGAAACTATTACCCCTTGTCCCTCTTGTGCATGTGGCTGCCAGAACAAAAGGAATTGTGTCAAGAGTGACTCTAAAATTCTGAGCATGGTTGGTGTTCACACTCCAAAGAAAGACAATGAACCATTGATGCAGTGCACTCATCATATGTGTCCAATAAGGGTGCATTGGCATGTGAAGCAAAACTATAAGGACTATTGGCGAGTCAAGATTGCCATAACAAATTTCAATTACAGGATGAACTATTCCCTATGGACTCTTGCAATTCAGCATCCAAATCTCAACAATGTCACACAAGTTTTCAGCTTTGATTACAAGCCTATACTTCCCTATGCTTCCATAAATGACACTGGCATGTTTTTTGGCATGAAATACTTCAATGATCTATTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAAGTGCTTCTTCAGAAGGACAAAGACACATTCACATTCAAGCAAGGTTGGGCATTTCCAAGAAAAGTCTACTTTAATGGTGATGAATGCATGCTTCCACCACCAGATTCCTATCCATTCCTCCCTAATTCTTCCCCTCAAACACCAAGTGCCTTCCCAGCACTCATTTTATCATTGATATTCTTCCTAGTTTTATGA 1293 0.4362 MRLVILVLCVIVLFSNAGAYDPLDPNGNVTIKWDIVSWTPDGYVADVTLYNFQMFRHIMNPGWTLGWTWAKKEVIWSMIGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQAISSFQISVGQAGTSNKTVKLPKNFTLLAPGPGYTCGRAKVVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPACCLSLSSFYNETITPCPSCACGCQNKRNCVKSDSKILSMVGVHTPKKDNEPLMQCTHHMCPIRVHWHVKQNYKDYWRVKIAITNFNYRMNYSLWTLAIQHPNLNNVTQVFSFDYKPILPYASINDTGMFFGMKYFNDLLMEAGPTGNVQSEVLLQKDKDTFTFKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSSPQTPSAFPALILSLIFFLVL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2193 430 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Ahy10g2193 430 PANTHER COBRA-LIKE PROTEIN 5 429 - -
Ahy10g2193 430 PIRSF COBRA 1 430 IPR006918 GO:0010215|GO:0031225
Ahy10g2193 430 PANTHER PROTEIN COBRA 5 429 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2193 Ahy-Chr10 110556753 110559859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2193 19 430 COBRA Gene Family AT3G29810 67.470 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2193 - - gmx:100798678 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2708 20 137021110 137024060 Ahy10g2193 10 110556753 110559859 hybridization
Ahy10g2193 10 110556753 110559859 Ahy14g3043 14 139187131 139189793 PCT
Ahy10g2193 10 110556753 110559859 Ahy4g2683 4 124828705 124831164 PCT