Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2108 ATGGGTTGCATCAATTCCAAGAATGCTGTGTCTGGGGACTCATCACCTTATTTATCACCTGTTGATCATGTGATTTTGGAACCTCTTCCTCCACCAGCAGTTTCAGTTGCAGGATCAAGGGGCCATTCTCATGTGGCAGGATCGTCATTAGCAGATGAGAAGAAGAAATTGAAGAAGAACGCCTCCAAGAAGAGCAATGGCTCCTTTAGCATCAGGCTTGGATTCTCCAAGAGGCATGTTGATGCTGAACACAATGCTGCTGGTTGGCCAAGTTGGCTCACAGTTACTGCTGGTGAAGCTGTTCATGGATGGCTCCCTCTTAGAGCTGATTCTTTTCAGAAGTTAGATAAGATTGGACAAGGTACTTATAGCAGCGTGTTCAGAGCACGTGAAGTTGAAACAGGAAGGATGTTTGCTCTGAAGAAGGTGCGCTTTGACAATTTACAACCTGAGAGCATTAGATTCATGGCAAGAGAAATATCGATCCTTCGCAGGCTAGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTAAGCAATCTAGTAGCATATACCTTGTTTTTGAATACATGGAGCATGATCTTGCTGGCTTAGTATCGCGTCCTGATATTCTCTTCACTGACTCTCAGATAAAGTGTTACCTGCGACAGCTATTAAGTGGAATTGAGCACTGTCATATCCGTGGTATCATGCATCGTGACATTAAAGTATCAAACATCTTATTGAACAATGAAGGTATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTCCAAATAACAAGCATCAGTTAACCAGTCGTGTAGTAACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCGGTTGATTTGTGGAGTGTTGGTTGTGTATTTGCCGAACTTTTTCTAGGAAAACCAATCCTTAAGGGAAGAACTGAGGTTGAACAACTACACAAAATTTTTAAGCTGTGTGGATCTCCGCCGGACGATTTCTGGAAAAAGTATAAGCTTCCTCATGCAACAGTATTTAAGCCTCAAACTACTTACGAAAGCTCTTTGCGTGAGAGGTGTGCCGAGTTTCCAGAAACTGCTGTTGATCTACTTGAGACTTTATTATCCATTGACCCTGCCAATCGTGGAACCGCCTCCTCTGCCCTGATGTCTGAGTATTTCAACACCAAACCTTATGCTTGCAATCCATCAAACTTGCCAAAGTATTCGCCTAGCAAAGAACTGGATGCTAAAAGTCGGGAAGACATGTCGAGGAAAAGGACCGATGATAAAATGCAAATGCGAGATGCTGCAACATCGAGAAGGCAACCAAGACGAGTCAAGAAATATTTGCGAGAACCAATTGATCATACTCAATCAGTTTCCAAAGAGAATGGTCCTCATAATGTTCGTAGAAGCGACGGTAGATCACATGTTCAAAAGGGAATAGGAGCACACAAAGACTATCTACAACCCGAAATGGATGCAGTCTCGGACCTTTCGCAGATGGTGAATATTGCAGATGGTAATGGCTTTACTGTACCGGCACAAGGCGGCTATGACTGGGTGAAAAGGAGAAAGCAAGATGCTTCATCTACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATCCAAACTTTGCTAAAGGAACTTATGATTTAAACAGACAAAGGATGACTGCTTTGGACAAGAGATATAATGACAAGCAAGGTTACCATGAAGAGACTCGCGTAACCATGGATTTTGATCCTTCCGAACTATTGAATCATCAGGGAAATACAGATCATGGTTCGCAAGTGAGTGACATGCGGCGCGAAGTTCGAAAATCAAGGTTTGGAAGAGAGATATGA 1863 0.4267 MGCINSKNAVSGDSSPYLSPVDHVILEPLPPPAVSVAGSRGHSHVAGSSLADEKKKLKKNASKKSNGSFSIRLGFSKRHVDAEHNAAGWPSWLTVTAGEAVHGWLPLRADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNLQPESIRFMAREISILRRLDHPNIMKLEGIITSKQSSSIYLVFEYMEHDLAGLVSRPDILFTDSQIKCYLRQLLSGIEHCHIRGIMHRDIKVSNILLNNEGILKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPDDFWKKYKLPHATVFKPQTTYESSLRERCAEFPETAVDLLETLLSIDPANRGTASSALMSEYFNTKPYACNPSNLPKYSPSKELDAKSREDMSRKRTDDKMQMRDAATSRRQPRRVKKYLREPIDHTQSVSKENGPHNVRRSDGRSHVQKGIGAHKDYLQPEMDAVSDLSQMVNIADGNGFTVPAQGGYDWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLNRQRMTALDKRYNDKQGYHEETRVTMDFDPSELLNHQGNTDHGSQVSDMRREVRKSRFGREI* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2108 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Ahy10g2108 620 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Ahy10g2108 620 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Ahy10g2108 620 PANTHER CYCLIN-DEPENDENT KINASE 1 564 - -
Ahy10g2108 620 MobiDBLite consensus disorder prediction 35 65 - -
Ahy10g2108 620 MobiDBLite consensus disorder prediction 415 461 - -
Ahy10g2108 620 Gene3D Transferase(Phosphotransferase) domain 1 195 436 - -
Ahy10g2108 620 CDD STKc_CDK9_like 112 396 - -
Ahy10g2108 620 MobiDBLite consensus disorder prediction 589 620 - -
Ahy10g2108 620 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy10g2108 620 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy10g2108 620 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy10g2108 620 PANTHER CELL DIVISION PROTEIN KINASE 1 564 - -
Ahy10g2108 620 SUPERFAMILY Protein kinase-like (PK-like) 106 401 IPR011009 -
Ahy10g2108 620 MobiDBLite consensus disorder prediction 406 480 - -
Ahy10g2108 620 MobiDBLite consensus disorder prediction 603 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2108 Ahy-Chr10 109259048 109264293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2108 104 446 Core Cell Cycle Gene Families AT5G10270 45.856 1.02e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ahy10g2108 Pkinase 5.30E-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2108 - - gmx:100790917 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2593 20 134920389 134926232 Ahy10g2108 10 109259048 109264293 hybridization