Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2105 ATGGCAAGGAAGAGAAAGAGCATTGAAGTAGTGGAAGAGGGGAACATAATTGAGGGAAGTTTGGGATGGGAGGAGATGGTGAAGCAAGCTGCAGTGCTTGGTGGAGCGAGGAGGGCAAGGAAGCGCTACGTTGGCGTCCGGCAGAGGCCGTCCGGAAGATGGGTGGCCGAGATTAAGGACACAATTCAGAAGATAAGAGTCTGGCTTGGAACCTTCGACACTGCAGAAGAAGCTGCCAGAGCTTATGACGAGGCGGCGTGCCTTCTTCGCGGCGCCAACACAAGAACAAACTTCTGGCCTTGTTCTCAATCCTCCACAAGCCCTGCCCTGTCTTCAAAGATCACAAATCTGCTCCTTCAGAGGCTTAAGGAAAGGAACAACACTTGTTCTGCTTCGAATTCTGTTCTTATCAATCAAGAAATTCAACAAGTGGAGGCATGTGGAGGGACTAATTCAGCAGAATTCTCAATTGATCAGTTCAATGACCTCCTCAATGAGGAAGATTACGGCGCAAGCAACGTCGAATTCGTCGACAACGCTGCACGGATTGATTACATCACAAGCAGCTTTGAATCTTGCTTGGCCGACCACAACAACAGCACGGATTACAAGCCGGCGAGCGACGACGACAGCGAAGGAGAAAGCTCGGATTTCGGCCTCCAAAGCTATGCAGATTTCGCGTTTCTTGACAACATCTCTGCGCCGCCGAGCGGCTATTACTCGCCGTTCGAGATGGCGGAGGAGATGGATGAAGCTGTGGAAGCAGAGAACTACGGCATACCTGAGTGCTTGAAGAGAATGAAGTATGAGAGAAAGTTCTCAGCTTCACTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAAAAGGGTAGAACCGGAATTTCCATGGCTGACCAATTGACAAGCCTTCAAATGGCTTGTAACAAAAACAAACAAGAGAAGAAGATTGATGATGACAAAGAAGAAGAAAATATTGATCAACCAATGCCAATTGACATGAATTCCTCTTCTTCTTCACCTTCGTCGTCGTCGTCATCGTCGTCGTCGTCATCATCAAGTGTTGTTGATGCAGAGCTCTTGTTTTGGAGCTCACTAGATCTTTCACCAATTTACACAAAATCTTTCCCCTATTTGAATTGTTAA 1155 0.4719 MARKRKSIEVVEEGNIIEGSLGWEEMVKQAAVLGGARRARKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNTCSASNSVLINQEIQQVEACGGTNSAEFSIDQFNDLLNEEDYGASNVEFVDNAARIDYITSSFESCLADHNNSTDYKPASDDDSEGESSDFGLQSYADFAFLDNISAPPSGYYSPFEMAEEMDEAVEAENYGIPECLKRMKYERKFSASLYAFNGIPECLKLKLEKGRTGISMADQLTSLQMACNKNKQEKKIDDDKEEENIDQPMPIDMNSSSSSPSSSSSSSSSSSSSVVDAELLFWSSLDLSPIYTKSFPYLNC* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2105 384 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Ahy10g2105 384 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Ahy10g2105 384 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Ahy10g2105 384 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 305 - -
Ahy10g2105 384 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Ahy10g2105 384 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Ahy10g2105 384 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Ahy10g2105 384 MobiDBLite consensus disorder prediction 314 356 - -
Ahy10g2105 384 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Ahy10g2105 384 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Ahy10g2105 384 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 305 - -
Ahy10g2105 384 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2105 Ahy-Chr10 109234072 109235428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2105 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 1.54e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy10g2105 AP2 2.90E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2105 K09286 - gmx:100786711 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2590 20 134897320 134898790 Ahy10g2105 10 109234072 109235428 hybridization