Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2088 ATGTTGGGAATGAATAATCGTGTTGATTTGGTGGAGAAAATCACTCCGTGGAGGGAATCATGGAAAGTGCATGTTAAAGTTGTGAAGTTGTGGTACCAGAAGAATACAGCTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAAGCTACCATTAGAGATGAGCTTATATCAAAGTTTGCTGTGTCTCTAAATGAAGGTGATCTGTATTTGATAACCAATTTTACAGTTTTGCCAAACACTGGTTTGAACAGAGTGACCAAACATCGGTTCAGACTTTTGTTCCAATACAAGACCTCTGTTGTTTCTGTGGTCTCTCCAAGGATAACTCATTCCGGGTTGTGTTTTACATCAATAGATGAAATTGATCAAATGACAAGGGACCACAATTTCCTTATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAAGAAAGAGATGTAGCATCATATGGGAAGCTCATCAAAGCAGTTGTGCTAGAAGTTTTTAGTCATGGGAAAAAGGTCCAATGCAATGTGTTTGGAAATGCTTATGATCTCTTGGAATATGAAAACTTACAAAAATATCCAAGATCTCCACTGATTGTCCTTGAGTCTTTTAAAATCAAAGCAATTGAAGGTGGAGTAATTCTACAGAATGTGATCAATGTCTCTAGATTATTCATTAATCCAGACATTCCTGAGTCTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGACTTGTGACCAATGACCTTGGATACTTAATTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGAGATCAGTAGTATTCAAGATCTTGATGTAGATAACAGGGATGCTCATTACTTTGTAATTGAGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACTCATGTGTATGTGGTCATCCTGTTGTTGACCATGAGGATCTCTACCTTTGTGATGCTTGTTGTTCATGTGTTGAACATGTTATGCTCAAGTATAGGATTCGGGTAAAGATTCACCATGCTGGGTGTGATGTTTTGTTTGTTCTGCTTGATAATGCGGCAACAAAACTATTTGGAAAAACCTATTCTGAAGCATTTCTCAGGATAGACGAAGAATTCCCTGTTGATCCTAGTGTGCTTGCAGTATCAACTCCTTCATATTGA 1191 0.3753 MLGMNNRVDLVEKITPWRESWKVHVKVVKLWYQKNTALDPSQNLLHMVLMDEKLHKIQATIRDELISKFAVSLNEGDLYLITNFTVLPNTGLNRVTKHRFRLLFQYKTSVVSVVSPRITHSGLCFTSIDEIDQMTRDHNFLIDFVGIITGVRKERDVASYGKLIKAVVLEVFSHGKKVQCNVFGNAYDLLEYENLQKYPRSPLIVLESFKIKAIEGGVILQNVINVSRLFINPDIPESVEFLSRFSVASYGFSRLVTNDLGYLISKVDGDYFNPKEISSIQDLDVDNRDAHYFVIETIKEVMDEPDWWYYSCVCGHPVVDHEDLYLCDACCSCVEHVMLKYRIRVKIHHAGCDVLFVLLDNAATKLFGKTYSEAFLRIDEEFPVDPSVLAVSTPSY* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2088 396 SUPERFAMILY Nucleic acid-binding proteins 272 380 IPR012340 -
Ahy10g2088 396 Gene3D - 10 114 IPR012340 -
Ahy10g2088 396 SUPERFAMILY Nucleic acid-binding proteins 10 113 IPR012340 -
Ahy10g2088 396 Gene3D - 118 251 IPR012340 -
Ahy10g2088 396 SUPERFAMILY Nucleic acid-binding proteins 125 247 IPR012340 -
Ahy10g2088 396 Gene3D - 267 388 IPR012340 -
Ahy10g2088 396 Pfam Domain of unknown function DUF223 47 140 IPR003871 -
Ahy10g2088 396 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2088 Ahy-Chr10 108986991 108989284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2088 2 370 Core DNA Replication Machinery Family AT5G08020 20.256 1.27e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2088 - - ahf:112717926 804.283