Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2054 ATGGAGATAATCAGCAACAACGCCACCACCACCATAACCAACCCACCAAAATCACCAGAACCCGAATCAGAAATTCCGACCCGGATCCAACCCGCAAACACCAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGTCACCACCCTCCACCACACTACCACCACCAACTCGCAAGCCCTACCGCCGTCACCGCCGCCGTGCCGGTTACCTATAAGGAATGCTTGAAGAATCACGCCGCTAGTCTCGGTGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCGCCAACTGCTACCGCCGGCGATCCAACATCCATCAAGTGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGATCCCGACGAGCCACCACCACCTCTCTCTCCTGTAATCGAGTACCAACCTCACCACCGCCATCACCCTCCACCACCAGCTCCGCCACCTCCTCCGTTCCACCACCACCACCACCGGAGCCCTAACTCCGCCTCACCACCTCCGATCTCCTCTTCCTACTACCCTTCCGCACCGCACATGCTCCTCGCTTTGTCCTCGGGCGGCGGCCTCTCCGTTCCACCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACCATCTAAGTTCCCGAAAACGGTTCAGAACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCACGTGTTCGCGGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAGGAATTTTGCCATGAAGTCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTTGGGAAAAGAGAGAGAGAACAAGGTAATAATAAGAATGTTCTAGAAGGTCCTGGAATCAACGGTGCTGATGACAACAACAACAACAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGATGATGAACGGTGGTGATGGTAGCGGTCATGATGATGATGGTAGCGCTGATGCAAACGGTGCCGGTACTAATGGCTCTTCCTCTTCTTCTTGA 1032 0.5514 MEIISNNATTTITNPPKSPEPESEIPTRIQPANTKPVSFSNGVLKRHHPPPHYHHQLASPTAVTAAVPVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPLSPVIEYQPHHRHHPPPPAPPPPPFHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHHLSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEVGVDRGVLKVWMHNNKNTFGKREREQGNNKNVLEGPGINGADDNNNNNKSNGLNGGMMMMMNGGDGSGHDDDGSADANGAGTNGSSSSS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2054 343 MobiDBLite consensus disorder prediction 1 35 - -
Ahy10g2054 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 302 - -
Ahy10g2054 343 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Ahy10g2054 343 MobiDBLite consensus disorder prediction 120 173 - -
Ahy10g2054 343 Gene3D - 201 274 - -
Ahy10g2054 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Ahy10g2054 343 MobiDBLite consensus disorder prediction 1 18 - -
Ahy10g2054 343 SUPERFAMILY Homeodomain-like 203 275 IPR009057 -
Ahy10g2054 343 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 214 271 IPR006455 -
Ahy10g2054 343 MobiDBLite consensus disorder prediction 186 216 - -
Ahy10g2054 343 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 302 - -
Ahy10g2054 343 MobiDBLite consensus disorder prediction 294 309 - -
Ahy10g2054 343 MobiDBLite consensus disorder prediction 274 343 - -
Ahy10g2054 343 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2054 Ahy-Chr10 108410688 108412528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2054 16 322 ZF-HD Transcription Factor Family AT3G28920 51.863 7.01e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy10g2054 ZF-HD_dimer 1.70E-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2054 - - ahf:112783874 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2541 20 133725029 133726859 Ahy10g2054 10 108410688 108412528 hybridization
Ahy10g2054 10 108410688 108412528 Ahy14g2881 14 137448684 137450604 PCT
Ahy10g2054 10 108410688 108412528 Ahy4g2531 4 123137056 123138901 PCT
Ahy14g2881 14 137448684 137450604 Ahy10g2054 10 108410688 108412528 PCT
Ahy4g2531 4 123137056 123138901 Ahy10g2054 10 108410688 108412528 PCT