Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2052 ATGGGAAGACCACCATGTTGTGACAAAGAAGGTATCAAGAAAGGTCCTTGGACTCCTGAAGAAGACATCTTATTAGTCTCTTACATTCAAGAACATGGCCCTGGAAATTGGAAAGCTATTCCTTCTAAAACTGGTTTGTTAAGGTGCAGTAAGAGTTGTAGGCTTAGATGGACAAATTACTTAAGGCCAGGAATCAAAAGAGGTAATTTCACAAACCAAGAGGAGAATATGATCATTCACCTTCAAGCTCTACTGGGAAACAGATGGGCTGCAATAGCTTCTTACCTTCCACAAAGAACAGACAATGACATAAAAAATTATTGGAACACCTATCTGAAAAAAAGGCTCAGCAAGAAATTGGAAGAAGAAAAAAAAGATGGGTCTTGTTTGGCAAATAATAATAATGATTTTTCATCTCAGAAAGTTGTTATGCCACGTGGACAGTGGGAAAGAAGGCTCCAAACAGATATCAACATGGCAAAGAAAGCACTCACTCATGCACTCTCACCACAAAACAATAATAATAATAATAATAATAATAATAATATTGAATCCTTATCTTGTTCTTCTTCTTCCAATTCCAATTCTAATTCTTGTTCATCCAATAATAATAATAAAGCAACACAATCTTTAAGCTATGCTTCAAATGCTGATAACATAGCTCGGTTGCTCAAAGGGTGGATGAAGAAGAATAATAATAATGACACTGCTTCTAGCAAGGAGGGCATTTTAGGAACAAAAGTTTTTGGTAATGAGGAGTGTTTGGAGTCTTCAAATAATACTACTTCATCATTAGAGTTTTCTCATTCAATTTATTCCCAACAAGAAGAGAGCAAGACTGAAGAAATTGGTCAAGTTTTGATGCCTTTCCATTTGCTTGAGAAGTGGCTTCTAGATGAGACTAATATTGAGAAATTTATTTAA 924 0.3517 MGRPPCCDKEGIKKGPWTPEEDILLVSYIQEHGPGNWKAIPSKTGLLRCSKSCRLRWTNYLRPGIKRGNFTNQEENMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRLSKKLEEEKKDGSCLANNNNDFSSQKVVMPRGQWERRLQTDINMAKKALTHALSPQNNNNNNNNNNNIESLSCSSSSNSNSNSCSSNNNNKATQSLSYASNADNIARLLKGWMKKNNNNDTASSKEGILGTKVFGNEECLESSNNTTSSLEFSHSIYSQQEESKTEEIGQVLMPFHLLEKWLLDETNIEKFI* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2052 307 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 239 - -
Ahy10g2052 307 CDD SANT 69 112 IPR001005 -
Ahy10g2052 307 SMART sant 13 63 IPR001005 -
Ahy10g2052 307 SMART sant 66 114 IPR001005 -
Ahy10g2052 307 CDD SANT 16 61 IPR001005 -
Ahy10g2052 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy10g2052 307 Gene3D - 68 138 - -
Ahy10g2052 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy10g2052 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy10g2052 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy10g2052 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy10g2052 307 MobiDBLite consensus disorder prediction 125 145 - -
Ahy10g2052 307 Gene3D - 13 66 - -
Ahy10g2052 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ahy10g2052 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Ahy10g2052 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ahy10g2052 307 MobiDBLite consensus disorder prediction 168 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2052 Ahy-Chr10 108306081 108307916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2052 1 304 MYB Transcription Factor Family AT5G62470 48.378 1.95e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy10g2052 Myb_DNA-binding 3.20E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2052 K09422 - gmx:778078 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2539 20 133626852 133628703 Ahy10g2052 10 108306081 108307916 hybridization
Ahy10g2052 10 108306081 108307916 Ahy14g2876 14 137340146 137342027 PCT
Ahy10g2052 10 108306081 108307916 Ahy4g2526 4 123026367 123028228 PCT
Ahy14g2876 14 137340146 137342027 Ahy10g2052 10 108306081 108307916 PCT
Ahy4g2526 4 123026367 123028228 Ahy10g2052 10 108306081 108307916 PCT