Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2028 ATGGCGGGAAGTGCAACTAAGAAGGTTACATTTGTTTTCTTGGCTACTTTGGCCATTGTTGTTCGATGCATTGAAGCTGGTGGGAATGTGGTGTTTGATGATCATCTCAGAGAACAAGAGAGGATTGCTTATGAACTTGCCCTCAAAACTTACGTCCCAGACCCTTTGGAAGTTACATTCGAACTCAACCATCATGTTAACTTATTCATGAACAAAACTGAATCAAGGAGGAATCTGATGAAGATAAAGAGAAGGAACAGACGTTTTATCTGTGAAGCCACCAACCCCATAGACGGTTGTTGGAGGTGCGATCCCAATTGGGCCAGAAACCGCTTCAGGCTGGCGGAGTGCGCAAAGGGATTCGGAAGAAGAGCCAAGGGAGGCTTAGGCGGCCCAATCTACGTCGTCACTGACGAATCCGACGACGACATGATAAACCCTAGACCCGGAACCCTAAGATATGGAGTCCTCCTGAGGGGACCAGTGTGGATCATATTTGCAAGAAGCATGTTGATCAACTTGAAGCAAGAGTTGATCGTGACCTCCGACAAGACGATCGACGGGCGCGGCGCCAACATTCAGATCAGGGGCGGCGCCGGGCTAACGTTGCAGTTCGTGAACAATGTTATCATTCATGGGATTCGCATCAAGGGAGTGAGGTCCAGATCTGGTGGCATGATAAGGTCAAGTGCAGATCATATTGGTCTGAGGATGAGGAGTGATGGTGATGGCATCACCATCTTTGGGTCAAGCAACGTTTGGATCGATCATATCTCCATGTCTGACTGCGAGGATGGCCTCATCGATGTTGTTGCCGGTTCCACTGGCATCACCATCTCAAATTGCCATATGACCAAACACAACGATGTGATGTTGTTTGGAGCTGATGACAGATTCACAAGGGACAAGATCATGCAAGTGACCGTGGTATTCAACCACTTCGGACAAGGATTGATTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTTAACAACGACTACACCCACTGGCTCATGTACGCCATTGGAGGAAGCTCAAACCCAACAATTCTAAGCCAGGGCAACCGCTTCATCGCTCCCAACAACATGGCGGCCAAGGAGGTGACCCACCGCGACTACGCCAGGCCCGAGGAGTGGGCCAACTGGCAGTGGCGCTCGGAGAATGACCTCTTCATGAACAACGCCAGGTTTGTTGAGTCTGGAGCTCCAATTACCAATCTACCCTTCAGGGGGTTCCTCATGACCCCTCGACATGGTTCTCATGCTAACAGACTCACTAGTTATGCTGGTGCTCTTACTTGCGTTGTTGGCAGGCCTTGCTAG 1332 0.4985 MAGSATKKVTFVFLATLAIVVRCIEAGGNVVFDDHLREQERIAYELALKTYVPDPLEVTFELNHHVNLFMNKTESRRNLMKIKRRNRRFICEATNPIDGCWRCDPNWARNRFRLAECAKGFGRRAKGGLGGPIYVVTDESDDDMINPRPGTLRYGVLLRGPVWIIFARSMLINLKQELIVTSDKTIDGRGANIQIRGGAGLTLQFVNNVIIHGIRIKGVRSRSGGMIRSSADHIGLRMRSDGDGITIFGSSNVWIDHISMSDCEDGLIDVVAGSTGITISNCHMTKHNDVMLFGADDRFTRDKIMQVTVVFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWLMYAIGGSSNPTILSQGNRFIAPNNMAAKEVTHRDYARPEEWANWQWRSENDLFMNNARFVESGAPITNLPFRGFLMTPRHGSHANRLTSYAGALTCVVGRPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2028 443 Pfam Pectate lyase, N terminus 32 79 IPR007524 GO:0030570
Ahy10g2028 443 Pfam Pectate lyase 176 360 IPR002022 -
Ahy10g2028 443 PANTHER PECTATE LYASE 6 443 - -
Ahy10g2028 443 Gene3D - 94 436 IPR012334 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Ahy10g2028 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Ahy10g2028 443 SUPERFAMILY Pectin lyase-like 85 437 IPR011050 -
Ahy10g2028 443 PANTHER PECTATE LYASE 18-RELATED 6 443 IPR045032 GO:0030570
Ahy10g2028 443 SMART amb_all 169 366 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2028 Ahy-Chr10 107632782 107636415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2028 11 443 Polysaccharide Lyase AT1G14420 54.464 8.55e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2028 K01728 - gmx:100810615 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2515 20 132760390 132764463 Ahy10g2028 10 107632782 107636415 hybridization