Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2003 ATGGGAAGACCTCCTTGCTGTGACAAAACCAATGTGAAGAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAGATACTTGCTTATGTCTCCAACCATGGAATTGGAAACTGGACCTTGGTTCCCAAGAAAGCAGGACTGAACCGATGCGGAAAGAGCTGCCGGCTAAGATGGACTAACTACCTCAGACCGGATCTCAAGCATGACAATTTCACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGCAGCTATTGGAAGCAGATGGTCATTAATTGCGAAACGGCTTCCCGGGAGAACAGACAATGATGTGAAGAATTACTGGAACACAAAGCTGAGGAAAAAGCTTATGAACATGGGAATCGATCCGGTAACTCATAAGCCGGTGTCACAAGTCCTTTCTGACTTGGGAAGCATCAATGGCCTCCCAAGCACAGGAAACCAAATTGGTTTAGCCGCCAACAAGGATTTGATGAACAATATGTTACCAACCAGAACAGAACCATCCAACCCAATGGTGGAGCAGACACAAGAGGAACAAGCTCAATTTTGGGAAAATCAGGTGCAATACCAACAAGTCTTGGCCTCAGAATGTGTCCAACCAAATGTAGTCTTCAGCGAAGCTGCTTCGTCGAGTTCTTCGTCATCATCCTCCAATCTCACTCAATTGAGCTCCCCTCAGCAGTCATATAACTGTCACAATTCTCAAATAACTCCTCCTTGTTCCTCGTCGTTCGATTGGAGTGACTTTCTTCATGGTGACTCAATCATGTGGTCAGAGATGCAGCAGTGTGATCCACAGAGGGTTATGTCATCCAGTGAGGCATTCGGCGCTGTTGCTTGCGGCGCAAGCATGTGTGAAGGCCGTTCAAATTCAGGGGATTCATTTGTGGATGGTATTTTGGACAGGGACAGTGAAATAAGAGCAGCATTCCCTGAACTTTTGGATGATGCTTTTGATTATTGA 966 0.4596 MGRPPCCDKTNVKRGLWTPEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDNFTPQEEELIINLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMNMGIDPVTHKPVSQVLSDLGSINGLPSTGNQIGLAANKDLMNNMLPTRTEPSNPMVEQTQEEQAQFWENQVQYQQVLASECVQPNVVFSEAASSSSSSSSSNLTQLSSPQQSYNCHNSQITPPCSSSFDWSDFLHGDSIMWSEMQQCDPQRVMSSSEAFGAVACGASMCEGRSNSGDSFVDGILDRDSEIRAAFPELLDDAFDY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2003 321 Gene3D - 68 131 - -
Ahy10g2003 321 CDD SANT 69 112 IPR001005 -
Ahy10g2003 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ahy10g2003 321 CDD SANT 17 61 IPR001005 -
Ahy10g2003 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy10g2003 321 MobiDBLite consensus disorder prediction 210 231 - -
Ahy10g2003 321 PANTHER F14D16.11-RELATED 1 321 - -
Ahy10g2003 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy10g2003 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ahy10g2003 321 Gene3D - 7 67 - -
Ahy10g2003 321 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Ahy10g2003 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy10g2003 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy10g2003 321 PANTHER F14D16.11-RELATED 1 321 - -
Ahy10g2003 321 SMART sant 66 114 IPR001005 -
Ahy10g2003 321 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2003 Ahy-Chr10 106962868 106965340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2003 1 321 MYB Transcription Factor Family AT3G28470 49.271 1.73e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy10g2003 Myb_DNA-binding 6.60E-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2487 20 131991267 131992911 Ahy10g2003 10 106962868 106965340 hybridization