Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1949 ATGGCTTTCCTCAGTAGAGCTGGAAATATACTAAGGCAAGTGACAAGTAGGAAGATCAGTTCGGATTTATGTGAAATCCCGTCTGTTTTCCCGTCTGTACGGTGCATGTCAAATGCTCCAAGTACAAAGCTGTTTATAGGAGGTGTTTCGTATTCCACTGATGAGCAAAGTTTGAGGGAGGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCGGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGCCGAGTTAAGGTAAATTTTGCAAGCGAAAGACCTCGTGGATTTCAAGGTGGTGGTTTCGGTGGCTCTTTTGACAATGCTCCCTATGGTGCTGGAGCTGGTTCTGGATACCAAGGTGGTTATGGTAACTCTCCATATGGTGCAAGTTCAGGTGGTGGTGGCAGCTATGGTGGTGCATATGGTGGAGACAGCTATGGATCAAGTGGAAACACTTACAGCAGTGAGAGTAGCCGAGGTTATGGTGGAGGAAACGATATTGGTACTTATGGTAATGCTGCTGCTAGCGGTGGAGGCTATGGTGGCTATGTCCCGGCTTCTGGATTTGACAGGAGCAATAATTACAACACTTCTGCTGGATTTCCTAACAGTGATAACTATGCCAACGCTACTGGTGGTGGTGGAAACAGTTTCCCCAGTAGTCAATACAATGGAAGTGCCATGGCCGGGTATGGCAGTGGTGGTGTGGGTTCTGGCAGCAGTTTTGCCAGTGGATATGGAGCAACGGGACATGGTAGCACTAATGAATGCAATAACGATCAAGGAACTGCTGTGGATGATTTTGGAGGCTCCATGGACTAA 909 0.4719 MAFLSRAGNILRQVTSRKISSDLCEIPSVFPSVRCMSNAPSTKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFDNAPYGAGAGSGYQGGYGNSPYGASSGGGGSYGGAYGGDSYGSSGNTYSSESSRGYGGGNDIGTYGNAAASGGGYGGYVPASGFDRSNNYNTSAGFPNSDNYANATGGGGNSFPSSQYNGSAMAGYGSGGVGSGSSFASGYGATGHGSTNECNNDQGTAVDDFGGSMD* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1949 302 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 258 - -
Ahy10g1949 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Ahy10g1949 302 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Ahy10g1949 302 MobiDBLite consensus disorder prediction 273 294 - -
Ahy10g1949 302 SMART rrm1_1 43 116 IPR000504 GO:0003723
Ahy10g1949 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Ahy10g1949 302 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 258 - -
Ahy10g1949 302 MobiDBLite consensus disorder prediction 273 302 - -
Ahy10g1949 302 Gene3D - 29 135 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1949 Ahy-Chr10 105526839 105529216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1949 38 138 Eukaryotic Initiation Factors Gene Family AT3G16380 28.846 7.27e-07 48.5