Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1936 ATGAATCTAACGACGATGATGATGGAAAGAAAGGAAGAAGGCATGATAATAGAAGAGAACAAGAAGAAGAGCAATGAAAATGACAAGTTTACCCTGAAGGGATCGGCGGCGGCGGCGGCGTCGTCATCAACAAGGCAATGGTCGGCGTTTCGGAATCCAAGAATCGTGAGGGTATCAAGGTCATTTGGGGGAAAAGACAGGCACAGCAAGGTTTGCACCATAAGAGGGCTTCGTGACCGTCGGATCAGGCTCTCAGTCCCCACCGCCATTCAATTGTACGACTTGCAAGACAAGTTGGGACTCTCTCAACCAAGCAAAGTCATCGATTGGCTTCTTGATGCTACTAAACTTGATATCGATAAGCTTCCCCCTCTTCACTTCCCTCAACCCTGCTTCCAACCGCCGCAAACCCTATTCCCTCATCTTCTCCATGACCCTTCCTCTTTCTGGAAACCCAGGTTCTGGGATTTCGACTCTTCCGCTTCCTCCTCTTCTTCTTCCAGGTTTCTCAAAGGGAAGGACTTAATGACCACCATGCCCTCCGATAATAATAATAATAAAGCCAAGTGGATCTTCAAACCAAACAATGCGGATCATGAGAATCAAGAATTCGGAGGCGGTTACACTACTCAGAGGCTTTTCCCAATGGAGACTACTACCAATAATAATAATCCCTTTCAGAGTTTGTTTTTCAACAACAACTCTACCCCTGAGGCTTCTAATTTGGGAAGCCATGGATTGTTGTTTCCTTCTAGTTCTTGTTCTTCTTCATCTACAAGTATTTATCATCACCATCATCAAGTGGGAGATTATTATGGTAGTTATCCAATGCAATTGAACCATTTATCTTCTTTGCAAGTAGGCCCATCTGCTTCCTCACAATTATTGTTTGGTCCTTTATCTTCTGCTACTGCTACACCGCAGATTTTCACACCTTATGCACCATTTGTAACAACCCCATCATCTCTTCTCGAAGGTAGTAGTCATAATAATAATGGCGGTGCAGATTCAATAAAACAACAGCAGCATCAATTCATCAATAGTCACATTCATCACTTCTTGAACTCATCCTCCTCATCCACATCATCATCATCATCATCATCATCATCAACAAGCCTTCTTCTCCATCACCATCATCATTCATTATTCAGTTCATCATCACCTGTCAGACCCTTCTTCCCTACACCCTTCAGTTCCAAGCTTCTAGATTCTTCCTCGTCAGATCGTAATGGAGGCCACCAACCAGATCATAATAATAATAAGGGTACCACTACTACTACTACTTCAGGTCGTTCTTGA 1299 0.4349 MNLTTMMMERKEEGMIIEENKKKSNENDKFTLKGSAAAAASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKLDIDKLPPLHFPQPCFQPPQTLFPHLLHDPSSFWKPRFWDFDSSASSSSSSRFLKGKDLMTTMPSDNNNNKAKWIFKPNNADHENQEFGGGYTTQRLFPMETTTNNNNPFQSLFFNNNSTPEASNLGSHGLLFPSSSCSSSSTSIYHHHHQVGDYYGSYPMQLNHLSSLQVGPSASSQLLFGPLSSATATPQIFTPYAPFVTTPSSLLEGSSHNNNGGADSIKQQQHQFINSHIHHFLNSSSSSTSSSSSSSSSTSLLLHHHHHSLFSSSSPVRPFFPTPFSSKLLDSSSSDRNGGHQPDHNNNKGTTTTTTSGRS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1936 432 MobiDBLite consensus disorder prediction 398 432 - -
Ahy10g1936 432 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 418 IPR005333 GO:0003700
Ahy10g1936 432 Pfam TCP family transcription factor 64 127 IPR017887 -
Ahy10g1936 432 ProSiteProfiles TCP domain profile. 64 122 IPR017887 -
Ahy10g1936 432 PANTHER TRANSCRIPTION FACTOR TCP17 7 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1936 Ahy-Chr10 105064563 105066393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1936 12 229 TCP Transcription Factor Family AT5G60970 45.570 2.17e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy10g1936 TCP 3.60E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1936 - - adu:107470915 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2423 20 129506262 129508228 Ahy10g1936 10 105064563 105066393 hybridization
Ahy11g2029 11 129310466 129312285 Ahy10g1936 10 105064563 105066393 PCT
Ahy1g2890 1 109774278 109776094 Ahy10g1936 10 105064563 105066393 PCT
Ahy10g1936 10 105064563 105066393 Ahy11g2029 11 129310466 129312285 PCT
Ahy10g1936 10 105064563 105066393 Ahy1g2890 1 109774278 109776094 PCT