Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1928 ATGAGAGCCAAACTTCGTTTCAAATTAAGAACACAAAAACTTTGGTGTATACATCATACATGTATATATATAGAGAGGCCTATAGTATATACCATATTTAATTTGGTGCAGATCTTCGAAGAAGTTGCGCAAATCTGCACCAAGAAAAAATTAATGGAGTCTATGTTGTTGTCGTCAATCACAGCATTACTTCTGTTACTGCTCTCTTGCTTCACATTCACTTCTACAGATGCCTATGATGCACTTGATCCAACCGGTAACATAACGATCAAATGGGACGTCATTAGCTGGACTCCAGATGGCTATGTTGCTGTGGTATCAATGTACAATTTCCAACAGTATCGCCATATTCAGGCGCCGGGGTGGTCGTTAGGGTGGTCGTGGGCCAAGAAAGAAGTAATATGGAACATGATGGGAGGGCAGACCACAGAGCAAGGAGACTGCTCAAAGTTCAAAGCAGGCCAACCACATTGCTGTAAAAAGGACCCTCTAGTCGTTGACTTGCTCCCGGGGACTCCTTACAACCAACAGATCGCCAATTGCTGCAAAGGAGGTGTCCTGAGTTCCTGGGCTCAGGACCCCACCAATGCTGTTAGCTCATTCCAGGTCAGCGTTGGTTCGGCCGGAACAACTAACAGAACGGTCAAGTTGCCGCGAAACTTTACCCTCAAGGCACCTGGTCCTGGATACACTTGTGGCCCTGCAAAGATTGTTAGGCCAACTAAATTTGTTACTAGTGACAAAAGGAGAACCACCCAAGCCTTAATGACTTGGAATGTTACCTGCACATACTCTCAATTCCTGGCTCAAAAGACACCAACTTGTTGTGTTTCCCTCTCATCCTTCTACAATGACACAATAGTAAACTGTCCAACTTGCACCTGCGGCTGCCGGAACAAAACAGCGCCCGGAAGCTGCGTAGATCCAGACTCTACACATTTAGCTTCAGTTGTATCAGGGAAGCCTACGGATACGCCTCTTGTCCAGTGCTCCAGCCACATGTGTCCGATTCGAGTGCATTGGCATGTGAAGCTAAATTACAAGGAGTACTGGAGGATCAAGATCACAATCACAAATTTCAACTACAGAATGAACTACACACAATGGAACCTTGTCGTGCAGCACCCGAATTTTGATAATCTAACTGAGTACTTCAGCTTTAATTACAAGCCACTAATGCCTTATGAAGGCTTAAATGATACTGCTATGCTATGGGGAGTGAAGTTCTACAATGATTTTCTATCTTCAGCTGGACCCCTTGGTAATGTGCAATCAGAACTCTTGTTTAAAAAGGACAAAGAAACCTTCACTTTTGATAAGGGATGGGCTTTCCCAAGAAGGATCTATTTCAATGGAGATAATTGTGTTATGCCTCCTCCTGATGCATATCCTTGGCTTCCAAATTCAAGTTCAAGACTAGTTTTCTCTTTACTAGGCACTCTCATCATAGCCATTTTAGCTTCTATAATCTCATTGAATTAG 1482 0.4372 MRAKLRFKLRTQKLWCIHHTCIYIERPIVYTIFNLVQIFEEVAQICTKKKLMESMLLSSITALLLLLLSCFTFTSTDAYDALDPTGNITIKWDVISWTPDGYVAVVSMYNFQQYRHIQAPGWSLGWSWAKKEVIWNMMGGQTTEQGDCSKFKAGQPHCCKKDPLVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVSSFQVSVGSAGTTNRTVKLPRNFTLKAPGPGYTCGPAKIVRPTKFVTSDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCRNKTAPGSCVDPDSTHLASVVSGKPTDTPLVQCSSHMCPIRVHWHVKLNYKEYWRIKITITNFNYRMNYTQWNLVVQHPNFDNLTEYFSFNYKPLMPYEGLNDTAMLWGVKFYNDFLSSAGPLGNVQSELLFKKDKETFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNSSSRLVFSLLGTLIIAILASIISLN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1928 493 Pfam COBRA-like protein 102 265 IPR006918 GO:0010215|GO:0031225
Ahy10g1928 493 PANTHER PROTEIN COBRA 55 489 IPR006918 GO:0010215|GO:0031225
Ahy10g1928 493 PANTHER COBRA-LIKE PROTEIN 55 489 - -
Ahy10g1928 493 PIRSF COBRA 48 493 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1928 Ahy-Chr10 104881960 104885179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1928 64 486 COBRA Gene Family AT3G02210 72.326 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1928 - - gmx:100815779 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2418 20 129221601 129232082 Ahy10g1928 10 104881960 104885179 hybridization
Ahy11g2042 11 129819608 129823248 Ahy10g1928 10 104881960 104885179 PCT
Ahy1g2882 1 109578494 109582204 Ahy10g1928 10 104881960 104885179 PCT
Ahy10g1928 10 104881960 104885179 Ahy11g2042 11 129819608 129823248 PCT
Ahy10g1928 10 104881960 104885179 Ahy1g2882 1 109578494 109582204 PCT