Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1924 ATGGAAAGTAGCAGCAACAACCAGTGGAGTGCTGAGGAAGCCATTGGTGGCAATGCCCAAGCTCTTCAAGCACTCAGAGAAATCATCATCTTCCCGCGCCTATTTTCTCGACAAGCGCAGAGCCTTGGCCTCAAATGGCCTCGGGGATTGCTGCTCTATGGTCCACCAGGCACTGGAAAGACGAGTTTGGTTCGAGCAGTGGTTCGGGAATGTGGGGCGCATTTGAAAATTATTAGTCCGCACATGGTGCACAGAGCACATGCCGGTGAAAGTGAGAAAATTCTCCGAGAGGCTTTTGCTGAGGCAGCATCTCAAGTAGCTTTGGGCAAGTCATCAGTTATCTTTATAGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCTAAAAGGGAGCAAGATGTCCGAGTTGCCTCACAACTCTTTACACTCATGGACTCTAATAAACCTACTTCTTCTACAGCAGGAGTCGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCCGCTCTAAGAAGATCCGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAAGATCGCTTTCAAATTCTTAAGCTGTATACAAAAAAGATTCCATTGGATCCCAGTGTTGACATAAAAATTATTGCTGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCATTGTGTCGTGAAGCTACCATGTTTGCAATTAAAAGGTCAAATACAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGATTGGCAAAATGCAAGGTCCATTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTTGAAGTTCCCAAAGTGACTTGGGAAGACATTGGGGGATTAAAAGATTTGAAGAAAAAACTTCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGATGCATTTTCAAGATTGGGAATATCTCCCGTACGTGGAATTCTTCTCCATGGACCTCCAGGATGCTCAAAAACAACCCTTGCTAAAGCTGCTGCTCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTGCTCCGTAACACATTTCAGAGAGCCCGACTCGCGGCACCCAGTATAATATTCTTTGATGAGGCTGATGTTGTAGCTACAAAACGAGGTGATAGTTCAAGCAATAGTGCGACAGTTGGTGAGAGGCTTTTATCCACTTTGTTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGTTCTTTATGTGCCACCGCCTGATTTGGAGGCTCGATATGAGATACTTTGTGTCCATACGCGTAATATGAAAACAGCGAGTGACGTCAATCTCAGACGACTAGCAGAAGACACTGAACTCTTTACAGGAGCTGAACTGGAGGGGTTATGCAGGGAAGCTGGAATTGTGGCTCTAAGGGAAGACATATCCGCCACCGTTGTATGTGATCGTCATTTCCAGATAGTGAAAGATTCTGTAAACCCCGCATTAACAAAAGCTGAAATTAATTCATACTCATCTTTTATGAAGACCTCATCTCAAGCTTTTCCTAGACATTTTGATTCAGATATGGAATCAGATAGGAGCAAAAAGAATGGGTTCAATCCTATGTCTTTGGTTAAAATTAGTGTTGCCAGTTTTGTATTACTTGCTGCTGCTAAATACTATAACATAGGTGGAGACCAAATTGGACCTCATACACCAATGACCTGA 1731 0.431 MESSSNNQWSAEEAIGGNAQALQALREIIIFPRLFSRQAQSLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLKIISPHMVHRAHAGESEKILREAFAEAASQVALGKSSVIFIDEIDALCPRRDSKREQDVRVASQLFTLMDSNKPTSSTAGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKKIPLDPSVDIKIIAASCNGYVGADLEALCREATMFAIKRSNTNEDAINFSLTMEDWQNARSIVGPSITRGVTVEVPKVTWEDIGGLKDLKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVATKRGDSSSNSATVGERLLSTLLTEIDGLEEAKVLYVPPPDLEARYEILCVHTRNMKTASDVNLRRLAEDTELFTGAELEGLCREAGIVALREDISATVVCDRHFQIVKDSVNPALTKAEINSYSSFMKTSSQAFPRHFDSDMESDRSKKNGFNPMSLVKISVASFVLLAAAKYYNIGGDQIGPHTPMT* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1924 576 Pfam ATPase family associated with various cellular activities (AAA) 319 421 IPR003959 GO:0005524|GO:0016887
Ahy10g1924 576 Pfam ATPase family associated with various cellular activities (AAA) 50 184 IPR003959 GO:0005524|GO:0016887
Ahy10g1924 576 Gene3D - 187 271 - -
Ahy10g1924 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 509 IPR027417 -
Ahy10g1924 576 Gene3D - 277 419 IPR027417 -
Ahy10g1924 576 Pfam AAA+ lid domain 208 256 IPR041569 -
Ahy10g1924 576 Pfam AAA+ lid domain 448 493 IPR041569 -
Ahy10g1924 576 PANTHER AAA-FAMILY ATPASE 18 497 - -
Ahy10g1924 576 CDD AAA 285 385 - -
Ahy10g1924 576 Gene3D - 427 511 - -
Ahy10g1924 576 SMART AAA_5 315 466 IPR003593 -
Ahy10g1924 576 SMART AAA_5 46 188 IPR003593 -
Ahy10g1924 576 Gene3D - 2 185 IPR027417 -
Ahy10g1924 576 CDD AAA 16 184 - -
Ahy10g1924 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 266 IPR027417 -
Ahy10g1924 576 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 400 419 - -
Ahy10g1924 576 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 54 73 - -
Ahy10g1924 576 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 18 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1924 Ahy-Chr10 104828715 104835477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1924 250 529 Calmodulin-binding Proteins AT3G56690 40.196 2.90e-65 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1924 - - gmx:100814288 920.998