Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1840 ATGCAAAAGGAAAAGGAAGCAATCACCACCAATAAGGAGGGGATTAATAAGAAGGACATAGAAATAATGGAAGGTTGCAATGGAAAGGAGGAAACCCTACCACCTGGGTTTCGATTTCATCCAACCGACGAAGAACTCATTACTTGCTATCTCATAAACAAGATCTCGGATTCAAACTTTTCAGGCAGGGCAATAACTGATGTTGATCTCAATAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGCCTGAGGGACCGGAAGTACCCAACTGGGGTGCGAACGAACCGAGCCACGAACACCGGGTATTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAATAGTGTTACATCGGAGCTAATTGGGATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCCCCCAGGGGAGAGAAGAGTAATTGGGTCATGCATGAATATCGCATTCATTCTAAATCCACCTTTCGAACAACCAAGCAGGATGAATGGGTGGTTTGCCGTGTGTTCCAGAAGAGTGCCGGTGCAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAATATTGTGCCGCCGCCGCCAATGATGCAACTCGGAGACCCCGCCGCCGCTCATTTCCTCTATGGAAGGAACTATATGAATACTGCAGAGTTAGCAGAAGTAGCTAGGGTTTTGCGTGTTGGTACTGGATCAACCAGTACCAACCTGCCCGGGATGCAGCCTCAGATAAATTATCCAGTGGCTGCGTCTCCAGGAATTGGATTCACAATTTCAGGACTCAATTTAAATCTAGGAGGCGGAGGAGGCGAAACAGTAGTGGCCACAACACAACCAGTTTTGCGGCCCATGCAGCCGACTCCTCCGTCCCAAACATTGGGTATGGTTCCTCATCATCAAGTTCATCATGATGTGAGTTCCAACATGATTTCAACAAATTCCCTTGGTGCTGAGAATGTGGGTTACGTCAATGAAATAAGCAACACAAATGGTGGTCATGGAAATAGGTTTATGGGCATGGATCATTGCATGGATCTTGATAATTACTGGCCTTCCTACTAA 1125 0.4622 MQKEKEAITTNKEGINKKDIEIMEGCNGKEETLPPGFRFHPTDEELITCYLINKISDSNFSGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTTKQDEWVVCRVFQKSAGAKKYPSSNHASRAMNPFNLEIGHHNIVPPPPMMQLGDPAAAHFLYGRNYMNTAELAEVARVLRVGTGSTSTNLPGMQPQINYPVAASPGIGFTISGLNLNLGGGGGETVVATTQPVLRPMQPTPPSQTLGMVPHHQVHHDVSSNMISTNSLGAENVGYVNEISNTNGGHGNRFMGMDHCMDLDNYWPSY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1840 374 Pfam No apical meristem (NAM) protein 34 160 IPR003441 GO:0003677|GO:0006355
Ahy10g1840 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 371 - -
Ahy10g1840 374 Gene3D NAC domain 42 186 IPR036093 GO:0003677|GO:0006355
Ahy10g1840 374 ProSiteProfiles NAC domain profile. 33 182 IPR003441 GO:0003677|GO:0006355
Ahy10g1840 374 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 18 371 - -
Ahy10g1840 374 SUPERFAMILY NAC domain 30 182 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1840 Ahy-Chr10 102671441 102677521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1840 29 374 NAC Transcription Factor Family AT2G24430 51.676 3.01e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy10g1840 NAM 3.90E-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1840 - - gmx:100804931 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2309 20 126391564 126395032 Ahy10g1840 10 102671441 102677521 hybridization