LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g1784	ATGACGAAAATCGCTCTAGGGACCACCCGAGAGGCTACCCAACCCGATTGCATTCGGGCCCTCGTTGTCGAGTTCATAGCCACCTTCCTGTTTGTCTTCACCGGCGTTGCTTCCGCCATGGCCGCCGAAAAGCTTAGTGATGGAGATGCACTATTGCCTTTGGTTGCTGTGGCCGTGGCAAGTGCATTTGTGGTGGCTGTGATGATTTCATCCGGTCATATCTCCGGCGGGCACCTCAACCCTGCCGTGACCCTTGGGCTGCTGGTCGGCGGGCACATCACGGTGGTCCGATCGGTCCTTTATTGGATAGATCAGTTGGTAGCATCTGCAGCAGCTTCTTACCTTCTTTGCTACCTTTCCGGGGGACTGGCAATTCCAGTTCATACTCTAGCAAGTGGAGTTGGGTACAGTCAAGGAGTGATTTGGGAGATAGTGTTGACTTTCTCATTGTTGTTTACTGTCTATGGAAATATGGTGGATCACAAGAAGGGAGTTCCTACTGGACAGGGGCCCACAATAGTCGGGTTTGTTGTTGGGGCCAATATCCTCGCTGGTGGAGCTTTTTCTGCCGTCTCAATGAACCCAGCAAGATCTTTTGGGCCTGCATTGGTCATGGGTAACTGGACCGGTCATTGGATTTATTGGGTTGGGCCTCTTATTGGTGGAGGCCTTGCAGGCTTCATCTACGAGCATTTTCTCATTGACCGTACGCATACTTTACTCCCTCTTGATGAAGAAAACTAA	744	0.5134	MTKIALGTTREATQPDCIRALVVEFIATFLFVFTGVASAMAAEKLSDGDALLPLVAVAVASAFVVAVMISSGHISGGHLNPAVTLGLLVGGHITVVRSVLYWIDQLVASAAASYLLCYLSGGLAIPVHTLASGVGYSQGVIWEIVLTFSLLFTVYGNMVDHKKGVPTGQGPTIVGFVVGANILAGGAFSAVSMNPARSFGPALVMGNWTGHWIYWVGPLIGGGLAGFIYEHFLIDRTHTLLPLDEEN*	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy10g1784	247	PANTHER	AQUAPORIN TIP4-1	2	246	-	-
	Ahy10g1784	247	Pfam	Major intrinsic protein	12	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	PRINTS	Major intrinsic protein family signature	60	84	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	PRINTS	Major intrinsic protein family signature	175	197	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	PRINTS	Major intrinsic protein family signature	142	160	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	PRINTS	Major intrinsic protein family signature	19	38	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	PRINTS	Major intrinsic protein family signature	212	232	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy10g1784	247	ProSitePatterns	MIP family signature.	78	86	IPR022357	-
	Ahy10g1784	247	Gene3D	Glycerol uptake facilitator protein.	2	241	IPR023271	-
	Ahy10g1784	247	PANTHER	AQUAPORIN-8	2	246	IPR034294	-
	Ahy10g1784	247	SUPERFAMILY	Aquaporin-like	11	241	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g1784	Ahy-Chr10	100565103	100567728	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy10g1784	1	246	Major Intrinsic Protein MIP	AT2G25810	72.764	2.37e-117	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g1784	K09873		-	gmx:100793258	379.022

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g2230	20	123677014	123679435	Ahy10g1784	10	100565103	100567728	hybridization