Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1771 ATGAGCATTACTGAACCAAATTACAGCAGCTCAGAAACCGAAAGCAGTAGTGCTTCAAACTCAACTGCAAAAACTGTAACCGCAACCGCAACGGAAACCGCAACTACTGTAACCGTAACTGCCAAGCGCATTCGAGATTCTTCTAACAAACACCCCGTGTACCGGGGTGTACGGATGAGGAATTGGGGGAAGTGGGTATCTGAAATCAGAGAGCCGCGCAAGAAGTCTCGTATATGGCTTGGAACATTCTCCACTCCGGAAATGGCCGCCAGGGCTCACGACGTCGCCGCCCTCAGCATAAAAGGCTCCGCCGCTATTCTTAACTTTCCCAACCTCGTACACTCCCTCCCCCGCCCCGCTTCCCTCGCCCCTCGCGACGTTCAAGCTGCGGCCGCAAAAGCCGCCAAAATGGTCAAATTCGATTCTCCGACGACGTCCTCGTCGTCGTTATCTTCGTCCTCGTCGGTGGAATTGTGCTCCGATGAGGAGGAGTTGAGCGAGATCATAGAGCTTCCCAGGCTGGAGAGTGGCGAGTTGGATAAGGAGTTCGTTTTCGCTGACTCCGTGGATGGGTGGATGTACCAGCCGCCGCCTTGGTTTTCGTCGGAGAGCATGGCGGCGGCGTCGACGGAGGAGGAGGACGTTGTTGAAGATGGTGTTGTAAGTGCTTCTGGAAGTTCGCTTTGGAATTATTATTATAATATTATTACTAATTAA 717 0.5258 MSITEPNYSSSETESSSASNSTAKTVTATATETATTVTVTAKRIRDSSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGSAAILNFPNLVHSLPRPASLAPRDVQAAAAKAAKMVKFDSPTTSSSSLSSSSSVELCSDEEELSEIIELPRLESGELDKEFVFADSVDGWMYQPPPWFSSESMAAASTEEEDVVEDGVVSASGSSLWNYYYNIITN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1771 238 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Ahy10g1771 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 216 - -
Ahy10g1771 238 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Ahy10g1771 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 216 - -
Ahy10g1771 238 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Ahy10g1771 238 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Ahy10g1771 238 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Ahy10g1771 238 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Ahy10g1771 238 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Ahy10g1771 238 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Ahy10g1771 238 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1771 Ahy-Chr10 99936968 99938165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1771 16 202 AP2-EREBP Transcription Factor Family AT5G11590 57.843 1.81e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy10g1771 AP2 7.30E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1771 K09286 - cit:102608812 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2209 20 122945988 122947088 Ahy10g1771 10 99936968 99938165 hybridization
Ahy10g1771 10 99936968 99938165 Ahy16g2981 16 144656546 144657620 PCT