Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1749 ATGGAAGCTCAAGAGTTGTTTGAGCAGCAGCAAGACAATAATGCCCCGAGTTCTGAGCATTTCATGGTTGAGGAATTCTTTGATTTCTCGAACGAAGAAGCAGCTACTGCTCCGTTTATTCCCAACACCACCACCACCAACTCCACCCACTCCTCCCCCACTGCCCTAGACAGCATCAATTCCTCTTCCACGAACCCCAATTTCCTGACCGCCGACCTCTCCGTCCCGTACGATGATCTTGCTGAACTGGAATGGTTATCCAATTTCACCGAGGAATCATTTTCGAGCGAGGACCTGCAGAGGATGCAGCTCATATCAGGCATAAAGGCCCGAAGCGACACCGAGGCCCGTGAATTCCACCACCAAGTTGAGCCCAACCGAGCCAACTCAATACTCAACCCACAACTGTCGGTTCCAGCTAAGGCCCGAAGCAAGCGCTCGCGTGGGCCGACATGCAACTGGAACTCCCGCCTCCTCGTGGTGTCCCCAACCACATCATCTTCCCAGCCCGAGCCCATGGCTCTTCCCAAGAAGCCCGTGGCAAGGAAGAAGGACAGCAGAGATGAAGAAGGGGAGGGCAGGAAGTGCCTGCATTGCGCCACAGACAAGACACCTCAGTGGCGGACAGGGCCCATGGGCCCAAAGACATTGTGCAATGCATGCGGAGTGAGGTATAAGTCAGGCCGGCTGGTGCCTGAGTATAGGCCGGCTGCCAGCCCGACTTTCGTGCTGACTAAGCACTCAAACTCGCACCGGAAGGTTCTGGAGTTGCGGCGCCAAAAGGAGATGATGCGGGCCCAGCAACAACATCAGCAGCAACTGCTTCATCATCACCATCACCAGAGCATCATGTTTGATGTCTCATCCAACGGTCAGGATTACTTGATCCATCAGCAACTGGGTCCCCATTTTGGCCACCTAATCTAG 927 0.5469 MEAQELFEQQQDNNAPSSEHFMVEEFFDFSNEEAATAPFIPNTTTTNSTHSSPTALDSINSSSTNPNFLTADLSVPYDDLAELEWLSNFTEESFSSEDLQRMQLISGIKARSDTEAREFHHQVEPNRANSILNPQLSVPAKARSKRSRGPTCNWNSRLLVVSPTTSSSQPEPMALPKKPVARKKDSRDEEGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQQHQQQLLHHHHHQSIMFDVSSNGQDYLIHQQLGPHFGHLI* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1749 308 MobiDBLite consensus disorder prediction 39 59 - -
Ahy10g1749 308 MobiDBLite consensus disorder prediction 177 194 - -
Ahy10g1749 308 ProSiteProfiles GATA-type zinc finger domain profile. 190 226 IPR000679 GO:0006355|GO:0043565
Ahy10g1749 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 254 - -
Ahy10g1749 308 SMART GATA_3 190 240 IPR000679 GO:0006355|GO:0043565
Ahy10g1749 308 PANTHER GATA TRANSCRIPTION FACTOR 10 308 - -
Ahy10g1749 308 PANTHER GATA TRANSCRIPTION FACTOR 10 308 - -
Ahy10g1749 308 MobiDBLite consensus disorder prediction 161 194 - -
Ahy10g1749 308 CDD ZnF_GATA 195 242 IPR000679 GO:0006355|GO:0043565
Ahy10g1749 308 PIRSF Txn_fac_GATA_plant 1 286 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ahy10g1749 308 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
Ahy10g1749 308 Pfam GATA zinc finger 196 229 IPR000679 GO:0006355|GO:0043565
Ahy10g1749 308 Gene3D - 185 274 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1749 Ahy-Chr10 99237141 99238739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1749 15 308 C2C2-Gata Transcription Factor Family AT4G32890 47.436 1.74e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy10g1749 GATA 2.70E-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2195 20 122307677 122309277 Ahy10g1749 10 99237141 99238739 hybridization