Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1622 ATGACCATGGAGAATGGTGTTGATGATAGCAGTGATCAGTTCCCCAAAGGAATGCGTGTTCTTGCAGTTGATGATGACCCCACTTGCCTAATGGTTCTAGAAACTCTTCTCAGAAGATGTCAATATCATGTTACCACAACTAGCCAAGCAATAAAGGCATTGAAGCTGTTGAGAGAGAACAAGTTTGACCTTGTAATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTGGGACTGGAAATGGACCTACCTGTCATAATGTTGTCCGCAAATGGTGATACAAAGCTTGTGATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTACTAAAGCCTGTGAGAATTGAAGAGCTCAAGAACATTTGGCAGCATGTGATTAGGAGAAAGAAGTTTGATTCGAAGGAGAAGAACAAAACCAGGAACTCCGACAAGCCTAGTTCGGAGGGCGGCAATGTGCTAGGCTCAGCAGGAACAGGAAATTCAGAACAAAATGGGAAGCTGAATAAGAAAAGGAAGGATCAGGATGATGAAGAAGATGAGGAGCAAGATAATGGCCATGACAATGAGGATCCTTCGGCCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTTCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTAAGAAGATTCTTGATTTGATGAATGTTGACAAACTGACGAGGGAAAATGTGGCGAGCCATCTCCAGAAATATAGGCTTTATCTGAAACGAATCAGCTGTGTAGCGAACCAACAGGCGAATATGGTGGCGGCCCTAGGGAGTGCAGATCCATCCTACTTGAGAATGGGTTCTCTGAGTGGCGTTGGACATTTGCAAGCATTGAGTGGCTCGGGACAGTTTCCTAACAATGCTTTCAGGTCCTTTCCGCCGAATGGGATGGTTAGCAGACTGAACACTCCTGCTGGATTGAATGTGCATGGATTCCCTTCTTCAGGAGCATTTCACTTGGGTCAATCACAGAATCTAAACAGCTCAACTGTTGAGCAGCTGAAGTATCGGTCGTCCATTGTTCCTGTTAATCAGAATGGTGTTCATGGAATGCAGGTGCCTATGGGGCTTGATCCATTGCAACACAATAAGGGTGTTATTCCTGTTCAGAACTTGACCACTGGTATTGATGCTAAAACAAATTTTCCTGTCTCAAATAAACTCCCGGATCCACAATCAAGAGTAGCATCCGGCGCGCATCCCCCGCTTCTTGGTAGCTCAAACAATGCCTTGATGTTGGAAGCACGGCCACAAGACACACAAGGGGTTTTAGAATACGAAAACTTATCTTCTTCGGTACCTTCCCAACATTCAGAACTCCCATTCTCTTTGCTGGATCAAGGTAGATACAGTGATAATTGGTCTAGTGCTGTGCAATCATCTGGGATCCAGACCGGTTCTTACCCTTCAAGCGAAAGTTTTAGACAGACGGCAATACCTGCTACAGATAACATGGCTTCTTTACCCTTGCAAGAAGGGAATCTGAGTGTTTCTTCATCCATCTCTTTGCTGCCTAACCAGTCCTACAATTCGTTGATAGATACACACTCCCAAGCTGTGATTTTAGCTAATAGAACTGGTCATGTAAGCAATAGTGATGTGCCATTTCAAGGTTGGGATGATCGCAATGAAGATGCTAGCTACCATTCAAATGCTGTTTGTAACACAATAAACACTGTGGCCCCAGGTTCGAGTTCTGTTGGTCACACAACAATAAACTCAACCTTACACAGAAACTTGGAGTTTAATTATGGTGATAGCTTGCAAATGAAGCGCGATGCGATGACAAAGTTAGCGAAAGGGACCTCATTGAAACCGCATCAGGTGAATATCATGAACCAGCAGAAGTCTCAGCAGGGTAACTTCTCTAATAATGTTGGTTCCCTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGCAAGATGAGATGAAAATATTGGATGGAGGCTTCATTTGTGATAATTATTCTGGTGGCATATCAATGTGA 2043 0.441 MTMENGVDDSSDQFPKGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAIKALKLLRENKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNKTRNSDKPSSEGGNVLGSAGTGNSEQNGKLNKKRKDQDDEEDEEQDNGHDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVDKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRMGSLSGVGHLQALSGSGQFPNNAFRSFPPNGMVSRLNTPAGLNVHGFPSSGAFHLGQSQNLNSSTVEQLKYRSSIVPVNQNGVHGMQVPMGLDPLQHNKGVIPVQNLTTGIDAKTNFPVSNKLPDPQSRVASGAHPPLLGSSNNALMLEARPQDTQGVLEYENLSSSVPSQHSELPFSLLDQGRYSDNWSSAVQSSGIQTGSYPSSESFRQTAIPATDNMASLPLQEGNLSVSSSISLLPNQSYNSLIDTHSQAVILANRTGHVSNSDVPFQGWDDRNEDASYHSNAVCNTINTVAPGSSSVGHTTINSTLHRNLEFNYGDSLQMKRDAMTKLAKGTSLKPHQVNIMNQQKSQQGNFSNNVGSLEDLVSSMMKQEQDEMKILDGGFICDNYSGGISM* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1622 680 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Ahy10g1622 680 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Ahy10g1622 680 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Ahy10g1622 680 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Ahy10g1622 680 MobiDBLite consensus disorder prediction 138 202 - -
Ahy10g1622 680 SMART REC_2 18 128 IPR001789 GO:0000160
Ahy10g1622 680 MobiDBLite consensus disorder prediction 150 170 - -
Ahy10g1622 680 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Ahy10g1622 680 CDD REC_typeB_ARR-like 20 132 - -
Ahy10g1622 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 655 IPR045279 GO:0009736
Ahy10g1622 680 SUPERFAMILY CheY-like 16 138 IPR011006 -
Ahy10g1622 680 Gene3D - 198 261 - -
Ahy10g1622 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Ahy10g1622 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 655 - -
Ahy10g1622 680 Gene3D - 18 155 - -
Ahy10g1622 680 PIRSF RR_ARR_type-B 1 678 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1622 Ahy-Chr10 93799459 93803383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1622 1 661 Response Regulator Gene Family AT2G25180 43.722 7.52e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy10g1622 Response_reg 4.30E-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1622 - K14491 gmx:100809002 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3180 16 148165598 148168520 Ahy10g1622 10 93799459 93803383 PCT
Ahy10g1622 10 93799459 93803383 Ahy16g3180 16 148165598 148168520 PCT