Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1620 ATGGATACACAACAACAACAACCTCATCATCATCGGTGTGATAAAATTGCAAGCAAGAAACCATGGCAGAGTTCACAAGAAGATCAAAAGGAGCATCAGCAAGAGCAAGTAGATACTACTTTGTTGGATCTGAATCTGAATGTCCATGATGATGATGAGTGCAGCACAGAGTTGAGCCTCATCACGTGTTTGGACATGGATAATTCCTCAAAAACTACTTCAATTGAAGACAACAACAACAACAACACATGTTGTGCAGGTTCTGATCAAAGAGTGTTCTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCACAAGAGAGAGAGATCAATTGCAAAGAGAGGTCAGAATAGGTTATTAGGATCCTCTCCATTTATGATCCCTTTTCTTCATCATCATCATAGATATGCTAGTATTGCATCTTTACCTCTCTATGGTGCTTGTGCAAACAAACCACTTGGAATTCAAGCTCACTCCTTGATTCACAAACCTTCTTTTGTTCATCATCATCATCATATATCAAATGGCTTTGGAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAGGTGGCCAAGAACATGCTCAATTCTGCAGCAGATAATGAAGAAATCACAGCTTATCTTGTTACTAGGACTACTCAAGAAGACAATATAATGACCAAGAATAATAAGCACCTTGATTTATCTCTTAAACTCTAG 741 0.3941 MDTQQQQPHHHRCDKIASKKPWQSSQEDQKEHQQEQVDTTLLDLNLNVHDDDECSTELSLITCLDMDNSSKTTSIEDNNNNNTCCAGSDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQNRLLGSSPFMIPFLHHHHRYASIASLPLYGACANKPLGIQAHSLIHKPSFVHHHHHISNGFGRPPPLIGSSSVGRFQVAKNMLNSAADNEEITAYLVTRTTQEDNIMTKNNKHLDLSLKL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1620 246 MobiDBLite consensus disorder prediction 1 36 - -
Ahy10g1620 246 Gene3D Classic Zinc Finger 68 133 - -
Ahy10g1620 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 196 246 IPR044246 GO:0009788
Ahy10g1620 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 196 246 - -
Ahy10g1620 246 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Ahy10g1620 246 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
Ahy10g1620 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 187 - -
Ahy10g1620 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 187 IPR044246 GO:0009788
Ahy10g1620 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1620 Ahy-Chr10 93606529 93607705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1620 88 246 C2H2 Transcription Factor Family AT1G80730 48.276 3.29e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1620 - - aip:107621568 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2063 20 116399453 116400640 Ahy10g1620 10 93606529 93607705 hybridization
Ahy16g3177 16 148121718 148123078 Ahy10g1620 10 93606529 93607705 PCT
Ahy6g2482 6 109652296 109653535 Ahy10g1620 10 93606529 93607705 PCT
Ahy10g1620 10 93606529 93607705 Ahy16g3177 16 148121718 148123078 PCT
Ahy10g1620 10 93606529 93607705 Ahy6g2482 6 109652296 109653535 PCT