Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1592 ATGAACGAAGCCCGAATTGAAATCACGATTCCACACTTGTTCAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACACTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAAAAATGGCTTTCTGCTGGTAACCTCACTTGCCCAGTCACAATGCAGAAGCTTCACGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTTGGCCACCAATTCCACCCTGGAAACTCCGCAACAATCGATTACTTGACCAGCCTCAAACACGCTCTCCAGTCTCCTGACTCCTCCTTGGACCACAAGTTACAAGCACTCCACCAGATTCAACTACTCTCCGACGAGTACTGCTCCTTTAAGCGCTCATGCTTTAACCAACTGAGCTATTTGACGCTTCTATTACAACTTGTTTTTGAAACAAGATCCATGGAATTCACAGAGCTGGCGCTTTCTTGCATCGTAAAGTTGCTTCCTCTCGTGAATTTGGATCCGCTGAACATGATCAAAGACGAGTCGAAGCTATCAACGTTTGTTTCGTTATTGGAAAAGGGAACAACCAAAACCAAAACTAGCTTGTGCCATCTCATAGATTCAACCGCAACATCAACACAAACGCAAGAGTTATGTCACGTGCTTGGAAATTCACGGAAGGTGATAGAAGAGATTGTGAGACTAGCTCGCGAAATCCAGGAGGAAGAGTCATCTAAAGCAGGAATCAAAGCCATGTCAGCATTATGCAGCTTGCAATCGAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATTGATGGAGTGATAGCATACATGTCGGGATCTGACAAGTTGCAGAAGAATTTGGCTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGGTGTTAGAGAGTGGGAAAGTGGGAGTGGTGAACCACCCGAGTGGTATTCAAACGGTGGTGAAGATGGTGTTCAGGGTTTGCAACAACCAAGAGTATTGCTGTAGTGAGGTTGCTGTTGGGGTGCTTTTGGTAATTTGTCGTGATTATGGGGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGTTGTTGAGATCCAAGTGGAATCAGGAATCAAACAACAAACTATGA 1200 0.4575 MNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGHQFHPGNSATIDYLTSLKHALQSPDSSLDHKLQALHQIQLLSDEYCSFKRSCFNQLSYLTLLLQLVFETRSMEFTELALSCIVKLLPLVNLDPLNMIKDESKLSTFVSLLEKGTTKTKTSLCHLIDSTATSTQTQELCHVLGNSRKVIEEIVRLAREIQEEESSKAGIKAMSALCSLQSNRESLVRGGAIDGVIAYMSGSDKLQKNLAPMAMGIIEKLVVLESGKVGVVNHPSGIQTVVKMVFRVCNNQEYCCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNQESNNKL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1592 399 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Ahy10g1592 399 PANTHER WDSAM1 PROTEIN 9 390 IPR045185 GO:0061630
Ahy10g1592 399 Gene3D - 185 399 IPR011989 -
Ahy10g1592 399 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Ahy10g1592 399 CDD RING-Ubox_PUB 14 56 IPR045210 -
Ahy10g1592 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Ahy10g1592 399 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Ahy10g1592 399 SUPERFAMILY ARM repeat 93 379 IPR016024 -
Ahy10g1592 399 SUPERFAMILY RING/U-box 5 78 - -
Ahy10g1592 399 PANTHER OS02G0542800 PROTEIN 9 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1592 Ahy-Chr10 92366397 92368516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1592 8 391 U-box Gene Family AT3G19380 33.249 5.63e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1592 - - aip:107624179 763.451