Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1554 ATGGTTTATTTGTTTGTTTTTAACTCAGAGCACACTGCGTTAATCAGAGAAAACATTACTGCTTTTGCAAGTGAAATGAGTGAAAGTGGCAGGAAACGCTCTTCAAAGTGGGATACAAGAGATGATCCTGAATTTGGACCTGATAGTAAGCACTTGCGTTCTGGATGGTCCTCTGGAGATGTTGCTGGCAGCAATAACTCAAAATGGTCTTATATGGAAGGAAATGACAAGATGAAACCTCGCATGAGTAAGGAACCTTTTTCTGGAGGCAGGGGTTCAAATAAAGATGATATTATGAATAAAGACTATAGATGTTTGGATGCAAAAATGGAGTGGGAGGCGGATGCAAGTTACAGCAGGAGACGCAGTCCATCCCCAAAAAGTGGTTGGAGCAGGTCGGGCAGGAGTAGTAGAAGCAGAAGCCCTCCACATGGTTTCAAGTGGGATTCAGGAGCCAATGACAGAAATAGAACAAGGGCTGCAGAATCAAAGCAAATATGCAGAGATTTTGCTGTTGGAAAATGTAGAAGAGGAAGCCATTGCTATTTTCTTCACCATGATGACCAAAATTATGAGGATATTCGGGAAAGTAAAAACCGGGAAGATGGAGCTCCAAGATATTCTGCTTCACATGAGAGCAGGGAACATACTCTTAGGAGTAGATCCACTGAAGCTTGTGTTCATTTTGCAAAAGGCAGATGTAGAATGGGAGCATCATGCAAGTATGTGCATCATAACAATTCTGATGAATATGGTAAGGGTACTCTGGATGAATTAACTAGAGAAAGGGAAAATGATGGAAGGCGCAGAGATAATTCTTTTGAGCAGGGTGGTGGCCACATACCAAGCCGCAGTGGTGATACCCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAGCATTGTAGGTTTTCTCATGATAGGCAAGACAGAAGCTTAAGGGATGATAGATGGGGAAGCAATCTTGCTGGAGACCATCAGACCTTGGATAGACCAAAATTGAGTGATTCAGCTAGTCCTACTAGAAGGCTTAGAAGTGATAGATGGGGCACAGATGGCATTATGGCTGATAAGGATAAAGTATGGGACAGTCCAAACCGGAATGATATAGCTACCTATGATTCAGCAAAGTTGGTTGAAGAAAAACCTGGAAATATAGGTGCCACTGAGCATGAACAAACTGTATGGCCTGTGAAGGAAGGATGGGGTCATAGTTTAGACCAGAGCAGTGTGCAGGGTGAACCACCATTTTTAAGTGATAAGAAGGAAGCTGACCATTGGATAGCAGACAATGCTGGTGCCAGCATTCCCGTTTCCCAGTCAGTAGCTGCAGACATCTGGCCTGGGGACGCAAAAATGTCTCCTGATTGGAATTATAGAGCAGGATCTTCCACCCGTACGGAAATAGAGCATGGACAGAACGATCGTGGGTTAACTCAAGGAAGTACATATCCAGCCACCACTGAACATGACAGAATACAAGTTCCAGGGCAAGGTTTTAATCAGAATGTGCAAAATGTTAATCTTTTGCATTTGCCAAGCTGCCATGCAGTTGGACAAAATAAAGTGACAGTTCCCATTCTTCCTTCAAGAGCAGGAATTCCTGAAGGTATGCAAAAGCAAGAAGTCTCTGTTGAGAAAAAGTACTCTGCTGAGCCAAATATCACAGGTGAAGGCTCATCACAGATTAGTTCAAGTAATCCTTCAACACAGGACACAGTAAGCAAAGAACAGCTTGCTCAACTTTCCAATCTCTCAGCCTCTCTTGCTCACATCCTTGGATCTGGTCAGCAGCTGCCACAACTTTATGCTGCCTTAAATTCTCATAATACAAATGACACTCCCTCCTTAGCCAACACGGAAGTGCCTGCTATGCCTGTTTCCAATACGTATGTCAAGCCAGATCCTGCTGTTGGATTTGTAAAGCAGTATGATCCAATGAGTGATAGCGTTGACCTAAATGATGCTGAAGCAAGTGGAATCTGCCCAGTCATTTCTCCAAGTAAAAAAAGTGCAAATATAGAAATTTCATCACTGTTGTCTAACACTGGGAAACAAAATTGTGGTGATACTTCTAAGGCCCCCTCCTCAGAAGAGCAACCTGCCAAGAATGAACATCTGACCCAATTGCAGCCAGGTCAAAACATTGAGATACAGAAGGAAACCAATGAAGCGGTAGCTGATGATAAGCCAAATCCTCAAGATGATCATAAAATTACAAAAGAGAATGGTCCTTCAGAAAACATAGACCACAATGGTGTTGAGGCCAATAAAAGCAAGGATGTGAAGGGGATTCGTGCTTTCAAATTTTCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACTTGGAAAGAAGGAAAAATCACTAAAGATGATTATAAAACAATTGTGAAGAAGGTTGTAGATAAAGTAACCGGTACCATGCAGGGAGCCCATATTCCTCAGACTCAAGAGAAAATTGACCATTATTTGTCGTTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCACAAGGCCTAG 2547 0.4229 MVYLFVFNSEHTALIRENITAFASEMSESGRKRSSKWDTRDDPEFGPDSKHLRSGWSSGDVAGSNNSKWSYMEGNDKMKPRMSKEPFSGGRGSNKDDIMNKDYRCLDAKMEWEADASYSRRRSPSPKSGWSRSGRSSRSRSPPHGFKWDSGANDRNRTRAAESKQICRDFAVGKCRRGSHCYFLHHDDQNYEDIRESKNREDGAPRYSASHESREHTLRSRSTEACVHFAKGRCRMGASCKYVHHNNSDEYGKGTLDELTRERENDGRRRDNSFEQGGGHIPSRSGDTLCKFFANGNCRNGKHCRFSHDRQDRSLRDDRWGSNLAGDHQTLDRPKLSDSASPTRRLRSDRWGTDGIMADKDKVWDSPNRNDIATYDSAKLVEEKPGNIGATEHEQTVWPVKEGWGHSLDQSSVQGEPPFLSDKKEADHWIADNAGASIPVSQSVAADIWPGDAKMSPDWNYRAGSSTRTEIEHGQNDRGLTQGSTYPATTEHDRIQVPGQGFNQNVQNVNLLHLPSCHAVGQNKVTVPILPSRAGIPEGMQKQEVSVEKKYSAEPNITGEGSSQISSSNPSTQDTVSKEQLAQLSNLSASLAHILGSGQQLPQLYAALNSHNTNDTPSLANTEVPAMPVSNTYVKPDPAVGFVKQYDPMSDSVDLNDAEASGICPVISPSKKSANIEISSLLSNTGKQNCGDTSKAPSSEEQPAKNEHLTQLQPGQNIEIQKETNEAVADDKPNPQDDHKITKENGPSENIDHNGVEANKSKDVKGIRAFKFSLVEFVKELLKPTWKEGKITKDDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVHKA* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1554 848 Gene3D - 279 319 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 684 757 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 684 723 - -
Ahy10g1554 848 SMART c3hfinal6 220 246 IPR000571 GO:0046872
Ahy10g1554 848 SMART c3hfinal6 162 187 IPR000571 GO:0046872
Ahy10g1554 848 SMART c3hfinal6 284 310 IPR000571 GO:0046872
Ahy10g1554 848 MobiDBLite consensus disorder prediction 115 163 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 724 747 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 309 323 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 556 578 - -
Ahy10g1554 848 ProSiteProfiles Zinc finger C3H1-type profile. 220 247 IPR000571 GO:0046872
Ahy10g1554 848 MobiDBLite consensus disorder prediction 58 72 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 121 140 - -
Ahy10g1554 848 SUPERFAMILY CCCH zinc finger 221 245 IPR036855 GO:0046872
Ahy10g1554 848 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 26 846 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 25 98 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 251 275 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 331 350 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 549 578 - -
Ahy10g1554 848 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 26 846 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 196 220 - -
Ahy10g1554 848 Gene3D - 156 258 - -
Ahy10g1554 848 Pfam RNA-binding, Nab2-type zinc finger 166 185 - -
Ahy10g1554 848 Pfam RNA-binding, Nab2-type zinc finger 225 244 - -
Ahy10g1554 848 ProSiteProfiles Zinc finger C3H1-type profile. 161 188 IPR000571 GO:0046872
Ahy10g1554 848 MobiDBLite consensus disorder prediction 29 49 - -
Ahy10g1554 848 MobiDBLite consensus disorder prediction 309 350 - -
Ahy10g1554 848 Pfam CCCH-type zinc finger 289 309 IPR041367 -
Ahy10g1554 848 SUPERFAMILY CCCH zinc finger 287 309 IPR036855 GO:0046872
Ahy10g1554 848 MobiDBLite consensus disorder prediction 251 286 - -
Ahy10g1554 848 ProSiteProfiles Zinc finger C3H1-type profile. 284 311 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1554 Ahy-Chr10 90700359 90706987 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy10g1554 zf-CCCH_4 7.70E-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1554 - K22909 gmx:100783856 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1991 20 113015437 113022022 Ahy10g1554 10 90700359 90706987 hybridization