Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1527 ATGGATTTGGATGATTTCCGATCCATATTGGATACTGCCGGCGTTGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCTTCCTTGGATTGCGGTGATGAGCTGAGGCGACGGAGGGATGGAATCATAGAACGAATCTTCGCTGCCACCACACCTCCTCTGCCGTGCCGGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCTACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGCCGTGGTGCCGCCGCTGCAGTTTCTCCCTCAACGCCGCAGTCTCTCGGAGATGATGATGACAACGGCCACGCCGACGCCGCCGAAGACGACCGTGAAGATTTGGATCCTTACGGCGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCCGACCAGTCTGAAGAATCGTTGGTGGAGCTGCTGCAAAATCTCGCAGACATGGATATTACATTCCAAGCGTTAAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGAAAGCATTCCTCCAATGACGTTCGCAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAGGTTGAATCAACCGGGTGGAACAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAACCACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGAAGTTCTGGGTCTGACCGTAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCGCCAAAACCAACGCCGCCACCTTCAGTCCCTACTCCTTCCATCGCCTTCCAAAATAGACAGAGAGAACAAAGAGATAGAGATTTTGACGCGGAGAGGCTTGCTTCGGCAAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCGAAAAAGCAAAGAACGATTCAGGTGATGGACATCCACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCAGGGAAGGCACTGGTGA 1116 0.5206 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPLPCRNCDGDRNLRSNGYQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPGGTASLMADGDSPPLKTTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGSGGSQGRHW* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1527 371 MobiDBLite consensus disorder prediction 302 316 - -
Ahy10g1527 371 SMART TFS2_5 144 215 IPR003617 GO:0005634
Ahy10g1527 371 Coils Coil 313 340 - -
Ahy10g1527 371 ProSiteProfiles TFIIS N-terminal domain profile. 139 216 IPR017923 -
Ahy10g1527 371 MobiDBLite consensus disorder prediction 234 267 - -
Ahy10g1527 371 MobiDBLite consensus disorder prediction 347 371 - -
Ahy10g1527 371 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 371 IPR044790 -
Ahy10g1527 371 CDD TFIIS_I 141 214 - -
Ahy10g1527 371 Pfam TFIIS helical bundle-like domain 164 213 IPR017923 -
Ahy10g1527 371 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 371 - -
Ahy10g1527 371 MobiDBLite consensus disorder prediction 222 316 - -
Ahy10g1527 371 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 223 IPR035441 -
Ahy10g1527 371 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 142 222 IPR035441 -
Ahy10g1527 371 MobiDBLite consensus disorder prediction 73 135 - -
Ahy10g1527 371 MobiDBLite consensus disorder prediction 281 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1527 Ahy-Chr10 88760382 88763848 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy10g1527 Med26 3.70E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1527 - - aip:107622503 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1960 20 109924524 109928061 Ahy10g1527 10 88760382 88763848 hybridization
Ahy13g3104 13 125007420 125009790 Ahy10g1527 10 88760382 88763848 PCT
Ahy3g2779 3 121843616 121846051 Ahy10g1527 10 88760382 88763848 PCT
Ahy10g1527 10 88760382 88763848 Ahy13g3104 13 125007420 125009790 PCT
Ahy10g1527 10 88760382 88763848 Ahy3g2779 3 121843616 121846051 PCT