Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1516 ATGTGTATTGCAAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGAGAAGAGGGAATTGGAAGTTGATGAGAGGATAAACAACAACAATTCTACGTTGTCATCATCAATGCATATGATATTCCCAGGTTTGAATAGGGAGGAGGAGATGTCTGCCATGGTTTCGGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCAGTGCAGGTGACGATTATTCACTTCCAACAAGTAACATGGCTTATGGTTCTTCAACATTTTCTAATTATGTTGTTGGAAGCGGCTCTTCTTCTATCAAGAGAACTAGGCAGCAAGATGATATATCCTTTGTTGACCACTTCTCTTCATCACATGGTGTAACTTCTTCATCCCCTACTACTATTCATACAACAATGAATAGAGAATGTTCAAGAGAAAGTGGAAGTGGGAGTGGAGAGGTGGAAGGAGAAAACAGGGGAAGGACAGTCTATGAATACAGAGCAAGAGAAGAGAATGTGAGAGAGGAAGAGCCAAGAAGGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCATTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTTGACACTGCCGAGGCCGCGGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCCGGGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCGCCACCGCAAATCACTGCTTCTTCGCTCGTGGCCATTCCAACTTCCACCGAAGCCATTGTTCACAGTGAGCCTCTTATTAGCACTACTTTGCATGGTTTTTCTTTTTCTTCTTCTTCTTCCGCGGGTTTGTATGGGAATTTTCCCACCATGGATTCCACTATGACGGTTATGGCTTCAAGTGTGGCTTCTCATCTTCGTCATTCTTCTCTGTCTTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCCTCTTCTGCGTTCGGTTCCACTAAGCAGTTGCCGGCGGCGTGGTCATCGGCTTCCGGTAACAGCTCTTCTTCGTCGGGATAG 1053 0.4824 MCIAKVANPQEKGNKVVEKRELEVDERINNNNSTLSSSMHMIFPGLNREEEMSAMVSALTHVVSGEVPTSAGDDYSLPTSNMAYGSSTFSNYVVGSGSSSIKRTRQQDDISFVDHFSSSHGVTSSSPTTIHTTMNRECSRESGSGSGEVEGENRGRTVYEYRAREENVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQITASSLVAIPTSTEAIVHSEPLISTTLHGFSFSSSSSAGLYGNFPTMDSTMTVMASSVASHLRHSSLSSTQASPPFLSSSSAFGSTKQLPAAWSSASGNSSSSSG* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1516 350 CDD AP2 176 235 IPR001471 GO:0003700|GO:0006355
Ahy10g1516 350 Pfam AP2 domain 176 225 IPR001471 GO:0003700|GO:0006355
Ahy10g1516 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 47 346 - -
Ahy10g1516 350 SMART rav1_2 176 239 IPR001471 GO:0003700|GO:0006355
Ahy10g1516 350 PRINTS Ethylene responsive element binding protein signature 199 215 IPR001471 GO:0003700|GO:0006355
Ahy10g1516 350 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Ahy10g1516 350 ProSiteProfiles AP2/ERF domain profile. 176 233 IPR001471 GO:0003700|GO:0006355
Ahy10g1516 350 MobiDBLite consensus disorder prediction 121 154 - -
Ahy10g1516 350 PANTHER DNA-BINDING DOMAIN 47 346 IPR044808 GO:0003700|GO:0009873
Ahy10g1516 350 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Ahy10g1516 350 MobiDBLite consensus disorder prediction 121 142 - -
Ahy10g1516 350 Gene3D AP2/ERF domain 175 235 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1516 Ahy-Chr10 87632600 87634983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1516 170 243 AP2-EREBP Transcription Factor Family AT5G13330 71.605 1.02e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy10g1516 AP2 3.80E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1516 - - aip:107621817 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1942 20 108396931 108398872 Ahy10g1516 10 87632600 87634983 hybridization