Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1419 ATGGATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTAAATAATAACGATATAGATACCAGTGATGTGACTTGGCGTAGTAGCATCAACATCCCCTTAAGATTCCGCACTCCTCTTTCTCTTGTTCTCGAATATTCTGGCATCATGTGCTCAAACCCCGATGTTTCTTCTCCTGCACCTGCACCTGCACCTGCACCTGGAGATGGACCTTCAACAACTCATTTGCGCCCTAGGTCTCAGCTTCAATCTGGTTCTGGTTCTGGTTCTGGTGGTGCCTGCAGTGGGACTGGTGAAGTTCAAATTCGCATAATTGGTACTGGGGACCAAGACAACAATGATGTGATTGGTTCGGTTTCCTCTTCTTCGCAGCTGAGTCGTGTGTCTCGATCGGGCCATCATGAGTGTATTATGGTCAACGGACGGCCGTGGCCGCCGCCGAACATTACCGACCCTGAGACTCGGCACCGGCTGATTCAGGACCCGCCTGTGTACGAGACACCTGCGTCTGAGGTGTATGAGCTTCTTGGTAGTGGTAATAGGAATGTTCAGCAGGCTGTTAAGTGGCTGGAACAGCTTATCCCTTTCTCCCTCTTGCTGTTGGTGGTGTTCATTCGCCAGCATTTGCAAGGTTTCTTTCTCACAATTTATGTATCAGCTGTGCTGCTTAAATCAAATGAGGTGGTTAAGGAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTGTTCTTGTTGGTATCTCAGTTGCCTTCATGCTCCACGTGATAGCCGTTTACTGGTTTCAAAATGATGATCTTTTATACCCAATTGCAATGCTTCCTCCAAAAGAAACACCGCTTTTCTGGCATGCAATATTCACCGTTTTGATCAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAGCTTTTGGTGCTAATTTTCTACAAATGTCGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACGTGTTGCTGTTGTATCGTGCCTTGCTGCCAACACCAGTTTGGTATCGGTTTTTCTTGAACCATGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTATCTAACATTCAAACTAACGACTTTAGTTGAGAAGATCCAAAACTTCTTTTCTGCCTTAAGACTATTATCGGGAAGGAAAGTCCAATATGGGGTTTATGCTACAAAGGAACAGGTAAAGTCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAGGAATGTGTGTCCGAATGGCTTGAGCGAGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTGTGTCAGTTGTTTTAA 1467 0.454 MDFPSSSSSSSSSSSSSSSSSSSSSSSSSSVNNNDIDTSDVTWRSSINIPLRFRTPLSLVLEYSGIMCSNPDVSSPAPAPAPAPGDGPSTTHLRPRSQLQSGSGSGSGGACSGTGEVQIRIIGTGDQDNNDVIGSVSSSSQLSRVSRSGHHECIMVNGRPWPPPNITDPETRHRLIQDPPVYETPASEVYELLGSGNRNVQQAVKWLEQLIPFSLLLLVVFIRQHLQGFFLTIYVSAVLLKSNEVVKEQTALKGDRKVSVLVGISVAFMLHVIAVYWFQNDDLLYPIAMLPPKETPLFWHAIFTVLINDTLVRQAAMAFKLLVLIFYKCRRGPSFRRQGQILTAVEYVLLLYRALLPTPVWYRFFLNHDYGSLFSSLTTGLYLTFKLTTLVEKIQNFFSALRLLSGRKVQYGVYATKEQVKSAGDMCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1419 488 ProSiteProfiles Zinc finger RING-type profile. 427 465 IPR001841 -
Ahy10g1419 488 SUPERFAMILY RING/U-box 420 470 - -
Ahy10g1419 488 ProSitePatterns Zinc finger RING-type signature. 442 451 IPR017907 -
Ahy10g1419 488 MobiDBLite consensus disorder prediction 73 114 - -
Ahy10g1419 488 CDD RING-HC_RNFT1_like 426 465 - -
Ahy10g1419 488 SMART ring_2 427 464 IPR001841 -
Ahy10g1419 488 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 488 IPR044235 GO:0061630|GO:1904294
Ahy10g1419 488 MobiDBLite consensus disorder prediction 1 38 - -
Ahy10g1419 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 474 IPR013083 -
Ahy10g1419 488 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 488 - -
Ahy10g1419 488 Pfam Zinc finger, C3HC4 type (RING finger) 425 470 - -
Ahy10g1419 488 MobiDBLite consensus disorder prediction 91 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1419 Ahy-Chr10 78564626 78568884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1419 54 488 C3H Transcription Factor Family AT5G01960 52.860 7.25e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1419 - K22379 gmx:100784614 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1837 20 100690567 100694772 Ahy10g1419 10 78564626 78568884 hybridization