Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1381 ATGGGTGAGGTAGTTGTGAGCGAGAGATTAGTTGGAACGGCTGAGGAAGAAGAGAAGCAGACGACTACGGTGGCGGCTGCCGAGGAAGAAACTACTGCAACGGAGGGAAAAGGCGGAGGAGGAGAATCGAAAGGGCTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTACTGAGGGTGCTCTTGGTTGAAGCTGATGATTCCACGAGGCAGATTATAGCGGCGCTCCTCAGAAAATGCAGCTACAAAGTGGCGGCTGTTCCTGATGGCCTAAAGGCATGGGAAATACTCAAGGGAAGACCACGCAATATCGATCTAATACTGACGGAAGTGGATTTACCTGCCATATCTGGCTATGCACTTCTCACTTTAATTATGGAACATGATATTTGCAAAAATATCCCTGTCATAATGATGTCCTCACAAGATTCTATAAGTACAGTATACAAGTGTATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCAACTGTTGCCATGAATGGCCTCCAAGATGAGAGTGTTGCGCAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCGTTCAAGTGGTGATGCTGCTTCCATTCAGAGAAATAAGGAATTAATCGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCCGACCTGGAAGCTGAGAGTGGCCCTGTCGATAACATGCAGGAATTTGCTTCACTGAAATGTGGTGAATCATATCCAACTGGAACAATGACACAAGAGGTAGAAACGTGCATGCGTTTGGGGCAGATATCAGTTATGCATGACAGTCATGCTGGAGGATTAGCTATGGCTAGTAGCAAAAATTGTGAGACAAGCACAACGAATGGCAAGGATGGCGATACAGAACATTTTCGGAGTGCTACTATCTGTGGTGAGGCTCATGACAATCACTGTGTTCAAATTAGCTGTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATAATCGTCCAAACTGCAGTCTCAAAACTCCCACAGTTAACTGCACAGGAAAGTTTGACTTCATTCCGCAGTTGGATCTTTCCCTAAGAAGACCTCATCCCAGCAACTGTGACAATGAACTCGCTGAAGAAAGAAATACCATCATGCATTCAAATGCCTCAGCTTTCAAGCGGTATACAAACAAGCAATTTCAAGCCTCACCTGCGATTTTAAACTTCTCTGACCAACAAAGGGAACAGAGAACAAATTGCGAGAAAAGTATATCCCATTTTGCTACTGGGTGTAATTCAGAAAGTTCAACACCTAGTGTGCAAAGAAATCTTTTATCTCCAACTACACCCCAATCGAAAGAATCTGAAGCAGCAACTTCACACTCACAACAGCAAGGGCACTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTGTGCACGGCCTATGGTTCTGTACTTCCTCCAATGTTTCGCACACAATCGGGTCCACCATTGGTGCCTAGCCCCAGTTCAGTTGTGCTTCTTGAACCAGCCTTTCAAGTAAATGGATTTTATCAATCAAGTGTTAAAGACAATAGTTCAGAGCAGGTTTATGAATCTCCCAGTTCTGGTGGAAAAAGTGCTCCAAACAACATGATTTCCAGACCGGAACACAAACCAGAACATGCTGAGGATCGAAGACATATCTCTCCTGCAACTGATCAAAGTGGATCCGGTAGCTTCTGTAATGGAAATGCAAGCCATCTTAATAGCATGGGGTATGGAAGCAACTGTGGAAGCAGCAACATTGTTGATCAGGTCCCAATTGGCAGAGCAGCTTCAGAGGGTAAGAATGAAGAGATGGCAAACAATGCGAGCTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAATAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGCCCGAGAGTGAAAGGTCAATTTGTTCGTCAAGTGCAGCCGGATGCACTCACTGCAGAGAAAGATGGCAAAGAATATGATCTTTAA 2094 0.4456 MGEVVVSERLVGTAEEEEKQTTTVAAAEEETTATEGKGGGGESKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPRNIDLILTEVDLPAISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTVAMNGLQDESVAQQKVEATAENNDASIRSSGDAASIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNMQEFASLKCGESYPTGTMTQEVETCMRLGQISVMHDSHAGGLAMASSKNCETSTTNGKDGDTEHFRSATICGEAHDNHCVQISCSKEAIDLIGAFHNRPNCSLKTPTVNCTGKFDFIPQLDLSLRRPHPSNCDNELAEERNTIMHSNASAFKRYTNKQFQASPAILNFSDQQREQRTNCEKSISHFATGCNSESSTPSVQRNLLSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPLVPSPSSVVLLEPAFQVNGFYQSSVKDNSSEQVYESPSSGGKSAPNNMISRPEHKPEHAEDRRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIGRAASEGKNEEMANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALTAEKDGKEYDL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1381 697 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 15 671 - -
Ahy10g1381 697 Pfam CCT motif 638 680 IPR010402 GO:0005515
Ahy10g1381 697 CDD psREC_PRR 60 163 - -
Ahy10g1381 697 SMART REC_2 58 173 IPR001789 GO:0000160
Ahy10g1381 697 MobiDBLite consensus disorder prediction 664 697 - -
Ahy10g1381 697 MobiDBLite consensus disorder prediction 560 576 - -
Ahy10g1381 697 MobiDBLite consensus disorder prediction 536 586 - -
Ahy10g1381 697 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Ahy10g1381 697 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Ahy10g1381 697 MobiDBLite consensus disorder prediction 10 43 - -
Ahy10g1381 697 SUPERFAMILY CheY-like 58 185 IPR011006 -
Ahy10g1381 697 MobiDBLite consensus disorder prediction 536 555 - -
Ahy10g1381 697 MobiDBLite consensus disorder prediction 10 24 - -
Ahy10g1381 697 MobiDBLite consensus disorder prediction 439 477 - -
Ahy10g1381 697 Gene3D - 56 274 - -
Ahy10g1381 697 ProSiteProfiles CCT domain profile. 638 680 IPR010402 GO:0005515
Ahy10g1381 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 671 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1381 Ahy-Chr10 75839996 75845215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1381 337 498 Response Regulator Gene Family AT5G24470 29.412 1.93e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ahy10g1381 Response_reg 1.10E-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1381 K12130 - gmx:100777119 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1779 20 95103928 95108951 Ahy10g1381 10 75839996 75845215 hybridization