Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1367 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGTAATCTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGTGGTGGAGGTGGCGGCGGTGGTGGTGGTGGGGGCCGTTTTGGGGTATCACGCCATTCTGAATACCGAGTTATTGTTCGTGGACTTCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAACCCTTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGGGTAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCTAAGAGGGATAGAAGATCATTGGAGCGATCTCTGTCTAGGTCACGTTCTAGATCCAGATCCGCATCCCCAATCAAGGCTTCAAGGCCAAGATCACGATTGCGATCTGCATCACCACACCAGGTGCTATCAGGAAGTGCTTGA 771 0.4721 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRDRRSLERSLSRSRSRSRSASPIKASRPRSRLRSASPHQVLSGSA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1367 256 MobiDBLite consensus disorder prediction 193 256 - -
Ahy10g1367 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Ahy10g1367 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Ahy10g1367 256 Gene3D - 2 114 IPR012677 -
Ahy10g1367 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Ahy10g1367 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 253 - -
Ahy10g1367 256 CDD RRM1_SF2_plant_like 8 79 - -
Ahy10g1367 256 SMART rrm1_1 117 186 IPR000504 GO:0003723
Ahy10g1367 256 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ahy10g1367 256 CDD RRM2_SF2_plant_like 116 191 - -
Ahy10g1367 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Ahy10g1367 256 MobiDBLite consensus disorder prediction 210 225 - -
Ahy10g1367 256 MobiDBLite consensus disorder prediction 81 107 - -
Ahy10g1367 256 Gene3D - 115 193 IPR012677 -
Ahy10g1367 256 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
Ahy10g1367 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1367 Ahy-Chr10 74845423 74849619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1367 6 174 Eukaryotic Initiation Factors Gene Family AT4G34110 24.571 4.26e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1367 K12890 - gmx:100800653 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1766 20 93774435 93778671 Ahy10g1367 10 74845423 74849619 hybridization