Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1339 ATGTTTTCTGTCATCATATGCTTATGGTATTTTCTTTGTTTTGTTATGTCTTTTGTAGGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAAAGTTGAGTTTCCAGCTGCCAAGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGATGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGAATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTAAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAGGGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAACTGCAAAGTTTCTTGGAGTTTCTGCTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGAAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTTTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGACTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGATTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGTGGAGGACTAA 957 0.4023 MFSVIICLWYFLCFVMSFVGVMGVSNTNYNSKLFIKVEFPAAKDFFARVNKLDPVDGQGIMPLVCGQPVSDEENFLRLSVYKTIAEIKEHNQDAVFVTAGTIKEVETKFGWWYKGCKKCRRGLRELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGETAKFLGVSAKDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKTCESEPTPSPAVDEKHNSKILGAKKHIEEIGEESVSSKSKKGKWVVVED* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1339 318 Gene3D - 71 242 IPR012340 -
Ahy10g1339 318 PANTHER REPLICATION FACTOR A 1, RFA1 73 242 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy10g1339 318 MobiDBLite consensus disorder prediction 265 287 - -
Ahy10g1339 318 Pfam Replication factor-A C terminal domain 96 219 IPR013955 -
Ahy10g1339 318 CDD RPA1_DBD_C 84 217 IPR013955 -
Ahy10g1339 318 PANTHER BNAC07G49340D PROTEIN 73 242 - -
Ahy10g1339 318 SUPERFAMILY Nucleic acid-binding proteins 81 231 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1339 Ahy-Chr10 72608180 72612239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1339 96 181 Core DNA Replication Machinery Family AT5G61000 33.333 7.33e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1339 - - ahf:112718260 627.861