LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g1296	ATGCAAGGTCAAAGAAGGACAACTGGATCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACATACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCCGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAATCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCGAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCATTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCAAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCCGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACACTCTTTTACAATCCGAAAATGGATGTTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGCCAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAACAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTGGCTCCCACTCATTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCTAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGATCTTCAACTTCTCATAACTCTGTAGAAAGAGTCGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACGAATGTACCTGCACCCACAGTACATGAACCAACACCATGGCGTACATCCTCTGCTAATGTAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCCTCTTCAGGATCTTCTTCTATTACTCAGGGGTCCCGCAACAATCAACCATATCTAAGAGCAGCATTGTTGATGGAAAGGAGGGGTGGCGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTTTGAAGTCGATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAAGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA	2091	0.4304	MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNIQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFESNNMIFPVSSNTNLHGNHSRIQPSFLRGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSKNPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNTLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVSQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSTVSSRHHNHSSPHQIPGSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARSSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANVNNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVILKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT*	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy10g1296	696	PANTHER	ZINC FINGER PROTEIN, PUTATIVE-RELATED	3	696	-	-
	Ahy10g1296	696	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	614	693	IPR013083	-
	Ahy10g1296	696	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	3	696	IPR045191	GO:0061630
	Ahy10g1296	696	SMART	ring_2	649	689	IPR001841	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	512	532	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	89	106	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	17	34	-	-
	Ahy10g1296	696	Pfam	Ring finger domain	649	690	IPR001841	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	166	189	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	169	189	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	340	359	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	89	112	-	-
	Ahy10g1296	696	SUPERFAMILY	RING/U-box	628	692	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	127	154	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	427	453	-	-
	Ahy10g1296	696	CDD	RING-H2_TTC3	648	690	-	-
	Ahy10g1296	696	ProSiteProfiles	Zinc finger RING-type profile.	649	690	IPR001841	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	1	34	-	-
	Ahy10g1296	696	MobiDBLite	consensus disorder prediction	372	413	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g1296	Ahy-Chr10	61761188	61766609	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy10g1296	18	696	C3H Transcription Factor Family	AT2G15530	34.590	1.43e-92	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g1296	-		K19041	gmx:100809024	1045.8