Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1266 ATGCCTCCTCTATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTAAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCTTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATAGAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCTTGTAGTTGAGGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCTTTCACCAAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTATTTCAACATGTTTCCTTTTTCTGATCTACTGAATATGACCGAAGATTATGATTTTTTAGTTGATGTTATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCCAAAGATCTTACCTTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATAATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAATCAAGTTCTTTAGGGGTCAAGAAGGCCTTCAAAATGTGATATATGCCACCCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAGTTCAGGCAGAGTATGATTGAGCAAGGGGTGAATGGTACCCAGCCACTATTTATTGCAAAAGAGGGTAAAGTTGTGTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACCATTGAAGAGCTTCAAGATAAGAATCAGGAGGGTTCTTTTATCATTTTTGGTATAATCCAAGGTATTGTTGAGGATGGAGGCTGGTGGTATTCTGCTTGTGTATGTGAAAAGGGTATCTATACTCATAATGGTGCATATTACTGTGATTTCTGTTTGAAGCACATTTAA 996 0.3735 MPPLFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCGKIEATVKKPLLNRFRDLVVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFFHQTTVVAVDEDVIPKTYFNMFPFSDLLNMTEDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIVLELTSKDLTLRCALFGDYVNQVNNFLASGYVEQPVVVIQLAKIKFFRGQEGLQNVIYATQMLFNPDLPEVVEFRQSMIEQGVNGTQPLFIAKEGKVVSLEDDFMRLTRKCTIEELQDKNQEGSFIIFGIIQGIVEDGGWWYSACVCEKGIYTHNGAYYCDFCLKHI* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1266 331 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 330 - -
Ahy10g1266 331 CDD RPA1_DBD_B_like 140 243 - -
Ahy10g1266 331 PANTHER REPLICATION FACTOR A 1, RFA1 22 330 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy10g1266 331 CDD RPA1_DBD_A_like 19 107 - -
Ahy10g1266 331 Gene3D - 6 112 IPR012340 -
Ahy10g1266 331 Gene3D - 265 331 IPR012340 -
Ahy10g1266 331 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Ahy10g1266 331 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Ahy10g1266 331 SUPERFAMILY Nucleic acid-binding proteins 6 112 IPR012340 -
Ahy10g1266 331 Gene3D - 114 251 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1266 Ahy-Chr10 54145313 54147065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1266 8 327 Core DNA Replication Machinery Family AT2G06510 24.484 5.57e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1266 - - ahf:112717561 652.514