Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1261 ATGGCTGAATCGTTTGATTTGTTGATGGATGTCAGTCCGAAAAAGCTTGCATGGAACTTTTTGGTCCATGTTGTTCGTTTATGGAAAGCTCCTTGCCGGTACAATCCTAAGGAGATCAATAGTATTGAAATGGTTCTTCAAGATAGTCAGGGAGGGAGGATCCAAGCTTCGGTCCCTAAGGCGTTGGTACGTAGATGGAATGATAACATTGATGAGTTCAAGATGTATAAAATGTCAAATTTCATTGTTGTAGACAAGAGAGAAAAAACCAAGACATCTATGAATCGGTGGACCTTAAATTTCTCTCACCGAACTGTGGTGCTCTTGGTGGAGAATCCAACTTTCCCACTTCAAGCGTTTCGATTAACGCAAATTTCAGAGTTGTTGAATGCTGACAGGATCAATGACTCTCAATTAATAGATATTATGGGTGAAGTGGTTGGAAAGGAAGATCCAAAGGAACTCATCACAAGCAAAGGGAAGGAAACGAAGCGTCTAGCTATTTTGGTTGAAGATCTTGATAATTATCGTATTGGGTGTGTGTTGTTTGGGGACATGGTTGATCAAATACTACCATACCTAGATGATGGAAGAGTTGAACCATTGATAGTGGTCTTGCAGTTCTTCCGACCGAGTAGATGGAATGAGAAAACCTCAGTACAGAGTCATTTCGACATTTCTAAGCTACGCATCAATCCCGATCTCGAGGAGGTTCGCGACTTTCGTGACAGGAGGCTTGCCGCTATACCCTCAAATTTGGTCAGAATTAGTCAAGTCAACACAAACAACTCACATTCTGGGGCAGATGAACTTAAGCGGGGTGATGTGACGGTGAACACAATAGAGGAAGCACTAAACTCAACACAGGAAGGCCCTTTGTGGATTGCTGGAACAATTGTGGCAATCAATTCTGGCAAGGATGATTGGTTTTACAAATCATGTAGAAAGTGTCCGAAGAAGGTTGAAACACCAATTGGAAATAGATACGAGTGTGGAAAGTGTGGCCACACTCACGGAAGTGCATCGTTAAGGTTTAAGGTTGAGGTGATGGCCTATGATGGCACTGGTAGCATAACACTGCTTCTATGGGATCGAGAAACGGTTCAACTATGTGGTAGACAAGCAGAACAGATCAAGGATGAGGAGGAACTTTATGCTGAAGGATACCCTGCAGCTCTTGAGAGCCTGTTAGAAAGAAAACTTCTTTTAAGGTGA 1215 0.4255 MAESFDLLMDVSPKKLAWNFLVHVVRLWKAPCRYNPKEINSIEMVLQDSQGGRIQASVPKALVRRWNDNIDEFKMYKMSNFIVVDKREKTKTSMNRWTLNFSHRTVVLLVENPTFPLQAFRLTQISELLNADRINDSQLIDIMGEVVGKEDPKELITSKGKETKRLAILVEDLDNYRIGCVLFGDMVDQILPYLDDGRVEPLIVVLQFFRPSRWNEKTSVQSHFDISKLRINPDLEEVRDFRDRRLAAIPSNLVRISQVNTNNSHSGADELKRGDVTVNTIEEALNSTQEGPLWIAGTIVAINSGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHGSASLRFKVEVMAYDGTGSITLLLWDRETVQLCGRQAEQIKDEEELYAEGYPAALESLLERKLLLR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1261 404 CDD RPA1_DBD_A_like 22 107 - -
Ahy10g1261 404 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Ahy10g1261 404 PANTHER REPLICATION FACTOR A 1, RFA1 22 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy10g1261 404 Pfam Domain of unknown function DUF223 43 124 IPR003871 -
Ahy10g1261 404 Gene3D - 256 404 IPR012340 -
Ahy10g1261 404 Gene3D - 7 108 IPR012340 -
Ahy10g1261 404 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 367 - -
Ahy10g1261 404 CDD RPA1_DBD_B_like 141 245 - -
Ahy10g1261 404 Gene3D - 114 248 IPR012340 -
Ahy10g1261 404 CDD RPA1_DBD_C 278 404 IPR013955 -
Ahy10g1261 404 Pfam Replication factor-A C terminal domain 297 390 IPR013955 -
Ahy10g1261 404 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Ahy10g1261 404 SUPERFAMILY Nucleic acid-binding proteins 279 402 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1261 Ahy-Chr10 53887495 53890556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1261 46 389 Core DNA Replication Machinery Family AT2G06510 22.905 7.38e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1261 - - aip:107630584 769.229