Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1098 ATGGTTGATTTGATGTTTGAGAGAAGGGGTGGAGTGGTTGATGTTATCATCCCTGGATATGAGGAAGATTTCAAATGTAAGATCATTCCTCCACGTGAGGCCTGGAGGATCAAAGTCAGGGTACTAAGGGCTTGGACTGTACCTAGCTTTGGTAATGCAGATGTTCCAAATTCAATGGAACTTATTCTGGTTGATGAAAATTCTACCAAAATCCAGGCCACTGTAAGGAAGCAACTAATACACAAGTTTAAAGATCATCTTCTTGAAGGCAGTTGTTATAAGATGAGTTATTTTGCTGTTGTTTCAAACCAAGGCTCTTATAGAGCTACAAAGCATGAGTTCAAACTCATTTTTCTATTTCGTACAACAGTGACAACAATTCCTGATGATATAATACCCAAGTCTTGTTTTTCTATATATCCCTTTGAAGACATATTGCAAATGAGTCAGGATCATGACTATTTAGTTGATGTAATTGGTCTTTTGACATTGGTTGGGGAAGAGAAAAACTATGACAGGGATGGTAAAACGGTTAAGATGGTTGTTGTCGAACTTTCTTCACAAAAGATGATGCTGCGATGCGCATTATTTGGAGAGTACGTGGACCAGTTAAATGATTTTCTTGCTTCTGGTTATGTTGAGCAACCGGTTGTCATTGTTCAACTTGCTAAGATTAAACTTTTTCGAGGTCAACCTGGTCTCCAGAATGTTATGAAAGCAACAAAAATTTACTTTAATCCTGATTTGTCAGAAGTTATTGATTTTCGAAAAAGCATGGTCGAACAAGGAATTAATGGCACTCAACCTTTATTCATTGCGAATGAGGGAAAATCCGTTTCATTGGAGGATGACTTCATGCGCCTAACTAGGCGATCCACAATAGATCAATTACATGATAACAAAGAGGATGGGAGTTTTGTTATTATGGGTACTATCACTGATATTGTTGAAGAGGGCTGTTGGTGGTATTCCACTTGTGTGTGTGGAAAGGCAGTTTATCCTGAGTCTGGGGTCTATTTCTGTGATCTTTGCATGCATCATGTGACAAATGTGATTCCAAGGTTCAGACTTAAAGTAGCAGTTTCTGATCATACTGGACAGGGCATATTCATTTTGTTTGATCGTGAAACAGCTTATTTGCTTAAAAAAGCATGTGCTGACCTTTTTAATGAAGTCCAAAAGGAGCCAACTGTTCTGTGTGGAGATAGCTATCCTATTACATTTAAAACTTTAGAGGGTAAAAAAGTTATACTAAAAGTAGATACCAAGTCCCTTGGTATAGACAAATACTTTGGAACCTTTCGTGTAAAAAGGATATGTGATGACCCAACTATTATTTCTATGTTTGAGCTTGCTGAGAATGAGAACGAAGTGACACCTGTCAAGGATGCACATGTTCCTGGGATTGGTTTGGACATAGGTGAACCCTCTTATACATAG 1440 0.3806 MVDLMFERRGGVVDVIIPGYEEDFKCKIIPPREAWRIKVRVLRAWTVPSFGNADVPNSMELILVDENSTKIQATVRKQLIHKFKDHLLEGSCYKMSYFAVVSNQGSYRATKHEFKLIFLFRTTVTTIPDDIIPKSCFSIYPFEDILQMSQDHDYLVDVIGLLTLVGEEKNYDRDGKTVKMVVVELSSQKMMLRCALFGEYVDQLNDFLASGYVEQPVVIVQLAKIKLFRGQPGLQNVMKATKIYFNPDLSEVIDFRKSMVEQGINGTQPLFIANEGKSVSLEDDFMRLTRRSTIDQLHDNKEDGSFVIMGTITDIVEEGCWWYSTCVCGKAVYPESGVYFCDLCMHHVTNVIPRFRLKVAVSDHTGQGIFILFDRETAYLLKKACADLFNEVQKEPTVLCGDSYPITFKTLEGKKVILKVDTKSLGIDKYFGTFRVKRICDDPTIISMFELAENENEVTPVKDAHVPGIGLDIGEPSYT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1098 479 CDD RPA1_DBD_B_like 157 259 - -
Ahy10g1098 479 CDD RPA1_DBD_C 296 437 IPR013955 -
Ahy10g1098 479 Gene3D - 131 267 IPR012340 -
Ahy10g1098 479 SUPERFAMILY Nucleic acid-binding proteins 289 442 IPR012340 -
Ahy10g1098 479 SUPERFAMILY Nucleic acid-binding proteins 137 259 IPR012340 -
Ahy10g1098 479 CDD RPA1_DBD_A_like 36 124 - -
Ahy10g1098 479 SUPERFAMILY Nucleic acid-binding proteins 28 130 IPR012340 -
Ahy10g1098 479 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 37 389 - -
Ahy10g1098 479 Gene3D - 26 129 IPR012340 -
Ahy10g1098 479 PANTHER REPLICATION FACTOR A 1, RFA1 37 389 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy10g1098 479 Gene3D - 280 444 IPR012340 -
Ahy10g1098 479 Pfam Replication factor-A C terminal domain 307 396 IPR013955 -
Ahy10g1098 479 Pfam Domain of unknown function DUF223 60 155 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1098 Ahy-Chr10 27821462 27825665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1098 30 366 Core DNA Replication Machinery Family AT2G06510 23.481 1.27e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1098 - - adu:110276578 967.607