Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1073 ATGCAGACGGTCCGAGATCTGTCTATCTGCTTCAGAAGACAAATTGAGAATCATCATCATTTGAGAGTAATGGAAGAAAGCATGTCAGGCTTTTGCATAAGCGACGGAAGAGGAAGTGTTGCTAATAACAATAATAGTGGCGGAAGTGGAACAAAGTGTGGGCGTTGGAACCCAACAACCGAACAAGTGAAGGTTCTGACAGAACTTTTCAGCTCTGGACTCAGAACTCCAAGCACCGATCAGATTCAGAGGATCTCTAATCAGCTCAGTTTCTATGGCAAAATTGAAAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGACAGAAAAGAAGAAGGCTTTCTTTTGATCATGATCATGGAGGTGGTGGAGTTGGAGATAATCATAGCACCATCAATATTAATCATTCTTCTACACAAAGTTTTGCACAGCTGTATTCAGAATCAGAGAAGGTGATTGAGACTCTTCAACTATTTCCATTGAACTCCTTTGGTGAATCAGAATCATCAGACAAGCTGAGTAGTAGGGTGCATGCAAATGATCAATGCCGGGATAATAATAATTTGATGTTCTCTTACACCATGGGGGAACAAATTGATCACCCTCCATTAGACCTTCGCTTAAGTTTCATGTAA 648 0.4074 MQTVRDLSICFRRQIENHHHLRVMEESMSGFCISDGRGSVANNNNSGGSGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQRISNQLSFYGKIESKNVFYWFQNHKARERQKRRRLSFDHDHGGGGVGDNHSTININHSSTQSFAQLYSESEKVIETLQLFPLNSFGESESSDKLSSRVHANDQCRDNNNLMFSYTMGEQIDHPPLDLRLSFM* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1073 215 Gene3D - 52 120 - -
Ahy10g1073 215 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Ahy10g1073 215 SUPERFAMILY Homeodomain-like 54 116 IPR009057 -
Ahy10g1073 215 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Ahy10g1073 215 CDD homeodomain 55 115 IPR001356 GO:0003677
Ahy10g1073 215 SMART HOX_1 51 118 IPR001356 GO:0003677
Ahy10g1073 215 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 24 203 IPR044555 GO:0003700|GO:0099402
Ahy10g1073 215 MobiDBLite consensus disorder prediction 114 137 - -
Ahy10g1073 215 PANTHER WUSCHEL-RELATED HOMEOBOX 7 24 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1073 Ahy-Chr10 26292804 26294450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1073 37 215 Wox Gene Family AT3G11260 56.085 3.76e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ahy10g1073 Homeodomain 2.90E-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1073 - - adu:107469676 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1461 20 40003504 40005160 Ahy10g1073 10 26292804 26294450 hybridization
Ahy10g1073 10 26292804 26294450 Ahy17g0977 17 12199188 12200782 PCT
Ahy10g1073 10 26292804 26294450 Ahy7g0805 7 10197577 10199008 PCT
Ahy17g0977 17 12199188 12200782 Ahy10g1073 10 26292804 26294450 PCT
Ahy7g0805 7 10197577 10199008 Ahy10g1073 10 26292804 26294450 PCT