LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g1038	ATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCGGTTGCAGAACAAATTCTTAAAAGTTTTCCTCTATGCTCATTATTAAGGCGCCATCTAACACCAACTAGAGAGATGCTTGAACCTTTGCTACGTACTGCTGCTGCAGTTGGCCTGCACTTGGATGTCTCGTCCTCAAAAGCATTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCTTACTTCAACAAGTTAATCCGCATTCTAGCAACTAGATGCATGACTCAGTATGCATTGAGGCTTTTATTAGTTGCAATTGGTGTTGGACTTTCAGCTTTTGTAGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGGCTTCAAGAATGAAAATGGAATATTTGAAATCAGTGCTGAGACAAGAAATTGGATTCTTTGATAGCCAGACAGCTGGTACTTCAACAACTTACCAAGTTGTCTCACTCATCTCCTCAGATGCCAATACCATCCAAGTTGCCTTGTGTGAGAAGGAGAACATACCTATTGAGGAGGTTTTTGAGAACCTGAGATGTAGTAGAGAAGGTCTCAGCAGCAAGGCTGCTGAGGAAAGACTCGCCATTTTTGGCCACAACAAGCCTTATTTTACAGATAATGCTGCTGCAGCTCTCATGGCTCGTCTCGCTCCAAAAGCAAAGGTGTGTCTGGATCAATTAGCAGTCAATATTTGGAGTCCATGTGGAGCACAGTGGTAA	729	0.4348	MVEEFMLAANVSVAEQILKSFPLCSLLRRHLTPTREMLEPLLRTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQYALRLLLVAIGVGLSAFVEGMCWARTAERQASRMKMEYLKSVLRQEIGFFDSQTAGTSTTYQVVSLISSDANTIQVALCEKENIPIEEVFENLRCSREGLSSKAAEERLAIFGHNKPYFTDNAAAALMARLAPKAKVCLDQLAVNIWSPCGAQW*	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy10g1038	242	SUPERFAMILY	ABC transporter transmembrane region	61	166	IPR036640	GO:0005524\|GO:0016021
	Ahy10g1038	242	SUPERFAMILY	Nucleic acid-binding proteins	1	91	IPR012340	-
	Ahy10g1038	242	Pfam	Cation transporter/ATPase, N-terminus	171	204	IPR004014	-
	Ahy10g1038	242	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	52	166	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Ahy10g1038	242	Pfam	ABC transporter transmembrane region	74	166	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Ahy10g1038	242	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	80	169	IPR039421	-
	Ahy10g1038	242	Gene3D	ABC transporter type 1, transmembrane domain	73	181	IPR036640	GO:0005524\|GO:0016021
	Ahy10g1038	242	PANTHER	ABC TRANSPORTER B FAMILY PROTEIN	80	169	-	-
	Ahy10g1038	242	Pfam	RNB domain	1	88	IPR001900	GO:0003723\|GO:0004540
	Ahy10g1038	242	SUPERFAMILY	Calcium ATPase, transmembrane domain M	170	204	IPR023298	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g1038	Ahy-Chr10	23700594	23705922	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy10g1038	170	204	Primary Pumps ATPases	AT3G47950	80.000	3.06e-14	70.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g1038	K12585		-	ahf:112715385	470.7