Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1014 ATGCTCATAAATCCCTTAGCAAAATCTTCTTTTTCAACAGCTTTTGAAGGATTTTTGTTTGGATCATGGCAACCAGTGGAGCATATGAAAATAGAGTCAGGAACTATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGCCTGGAGTTGATATATGTGTTCTTTCAACCCCACAATGCACTGCTAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGATTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAGCAAGGAAGTTAAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTAGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTCCCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGACGGCATGTACAACCGGACCGGTACCTTGGTTGCGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACTTGGCCTCCCAAGATGAGTGTATCGAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTCTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAGCCGTTATAATCTCAGGAACAAGCAAAACACGCAAGAAACCGGGAACGAAGAAAAAGTGGAAGAACTTTCTTCAAGAATCTATAGCGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCAGTTGATCTAGATGATATAGACATCGAACTTGGATGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATTCAAAAAGTAGTAGGAATCTTGATGATGAAGAAAGATCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGCTTCTAATATTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGCAAAATCTCAAGTGGAGAAAGAAGAAATTTCTGAAACGGCTATGTTATGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTACAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGCGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTGTGAGTTGTTTTTCTTAATTGCACAGGCAAGAGGAGAATCAGCGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACTCCAGCGACTCCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGCATGAAGAAAATGGCAATGTGTGGGAACTAGTTCCAGATTTGAAAGCAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCCGGAAAAACCTTCCTCATAATCGCGTTTCTCGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCATTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCCTCAAATGGGAGATTTCTTTACCGATTTATATCATCCATGGCCGCTCGTCGCAGAAGCAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGAGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGCCCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGCAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCTAAGTTTGTTCACGAAGCTTTATCAGAGTTGGATGGTAAATACCGGACGAATCAAAAGATTGCCGAGAAAGCAAAACATTTGCTCGAGTCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCAAGCGATGACGAAGACACGGAGCAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTCGGCAACTCTAATATTACTATGCCTGGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGCTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCGTGGCTGGTGAAAACGGTGGAGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGTCACAACATTGCACCAGTGAAGTTGCTTGTGGAATTGTTTGAGAGAGTTTTTAGTTGGAGAAAAGACAGAGAGATATTGGTACTCAACGGGGAACTTGAATTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCAGCGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCGGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCAATGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCAGCAACTATTGATCGGTAA 3777 0.4088 MLINPLAKSSFSTAFEGFLFGSWQPVEHMKIESGTMIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRPGVDICVLSTPQCTANNNDPVWIDGRINSIKRNPHDSDCSCQYYVNFYLNQGSFGTQRTLSKEVKVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYSPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPILVLPPPKKDEPIPLPQSRYNLRNKQNTQETGNEEKVEELSSRIYSGYGAAKLHKKKSVDLDDIDIELGWEGLSSKRRVQEKRNHHSSSTTYSKSSRNLDDEERSYKDRTLNAVSYKEVIDSYLRQIEEASNIEKEQPSIREQWMATTRECEQKNEMAKSQVEKEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETTGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFVSCFS*LHRQEENQRSDSEKLEAEEDSSDSKFFSTVDASRDEPMHEENGNVWELVPDLKAKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFLKWEISLPIYIIHGRSSQKQFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMSYTSFLSHMREDSRFSHGKYMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKAKHLLESRARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPGLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVECVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFSWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACSEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFNEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYSATIDR* 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1014 1257 Gene3D - 645 941 IPR038718 -
Ahy10g1014 1257 SMART helicmild6 1089 1174 IPR001650 -
Ahy10g1014 1257 CDD SF2_C_SNF 1056 1185 - -
Ahy10g1014 1257 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1060 1215 IPR001650 -
Ahy10g1014 1257 SMART ultradead3 670 912 IPR014001 -
Ahy10g1014 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 15 1251 - -
Ahy10g1014 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 15 1251 IPR044567 GO:0080188
Ahy10g1014 1257 Pfam SNF2-related domain 674 927 IPR000330 GO:0005524|GO:0140658
Ahy10g1014 1257 MobiDBLite consensus disorder prediction 358 410 - -
Ahy10g1014 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 900 IPR027417 -
Ahy10g1014 1257 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 699 898 IPR014001 -
Ahy10g1014 1257 MobiDBLite consensus disorder prediction 625 656 - -
Ahy10g1014 1257 Gene3D - 1011 1256 IPR027417 -
Ahy10g1014 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1213 IPR027417 -
Ahy10g1014 1257 Pfam Helicase conserved C-terminal domain 1057 1173 IPR001650 -
Ahy10g1014 1257 MobiDBLite consensus disorder prediction 449 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1014 Ahy-Chr10 21438483 21444442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1014 1045 1212 RAD5 or RAD16-like Gene Family AT5G43530 31.395 4.28e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy10g1014 SNF2_N 5.90E-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1014 K10875 - gmx:100811703 1365.9