Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1001 ATGGGAAGTGGAAACTCGCCATGTGCTTCATGCAAGCTTCTTAGACGGAGGTGTGCCAAGGATTGCATCTTCGCACCTTATTTCCCTTCCGATGACCCTCAAAAGTTCGCCATTGTTCACAAGGTCTTTGGTGCTAGCAACGTTAGCAAAATGTTACAGGAGCTTCCGATTCATCAAAGAGCAGATGCAGTGAGTAGCTTGGTATACGAAGCGAACGCAAGGGTTCGTGACCCGGTGTATGGATGCGTGGGAGCCATATCATACCTTCAGAACCAAGTCTCAGAGCTTCAAATGCAGCTTGCTGTTGCGCAGGCAGAGATACTCTGCATCCAGATGCAGCATGAACCCTCTGTAGCCGCAGCAATACCCAATCCACAACAAATAATGGAGTTTCAAGAACAGAACAATAATAATAATGAACTCACTCACCATCACCATCACCATCATCAGTACCTTAACTTTGCAGCAGCTTCTTCTAGCAATGTAATCCATGATTCTCTCTCTAGAGAGACTTTCTTTGGACATGACATGGTTTCTTAA 540 0.4556 MGSGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPSVAAAIPNPQQIMEFQEQNNNNNELTHHHHHHHQYLNFAAASSSNVIHDSLSRETFFGHDMVS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1001 179 Coils Coil 86 106 - -
Ahy10g1001 179 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Ahy10g1001 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 153 - -
Ahy10g1001 179 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Ahy10g1001 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1001 Ahy-Chr10 20212577 20213639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1001 2 118 AS2 family AT2G30130 90.598 2.57e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy10g1001 LOB 1.50E-42 No_clan